Variant report

Variant	rs10273137
Chromosome Location	chr7:41077260-41077261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10225807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249061	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57495174	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10273137	PPIA	cis	cerebellum	SCAN
rs10273137	TXNDC3	cis	parietal	SCAN
rs10273137	ELMO1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41062800-41082200	Weak transcription	Aorta	Aorta
2	chr7:41069400-41082000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:41074000-41078000	Enhancers	Fetal Thymus	thymus
4	chr7:41075800-41079000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:41075800-41079800	Weak transcription	NH-A	brain
6	chr7:41075800-41082600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:41076200-41078400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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