Variant report

Variant	rs10225807
Chromosome Location	chr7:41085469-41085470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:41085003..41085794-chr7:41744418..41745400,4	MCF-7	breast:
2	chr7:41084966..41085650-chr7:41735400..41736292,2	MCF-7	breast:
3	chr7:41085265..41086925-chr7:41153421..41155023,2	MCF-7	breast:
4	chr7:41084827..41085785-chr7:41750495..41751539,4	MCF-7	breast:
5	chr7:41084974..41085823-chr7:41744415..41745178,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236310	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10249061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273137	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57495174	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10225807	PPIA	cis	cerebellum	SCAN
rs10225807	ELMO1	cis	parietal	SCAN
rs10225807	TXNDC3	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41083800-41092000	Weak transcription	Aorta	Aorta
2	chr7:41084800-41086000	Enhancers	NHEK	skin
3	chr7:41084800-41086400	Enhancers	HMEC	breast
4	chr7:41084800-41087000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:41084800-41088000	Enhancers	Left Ventricle	heart
6	chr7:41084800-41088400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:41085000-41088000	Enhancers	Placenta	Placenta
8	chr7:41085200-41085800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr7:41085200-41086400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:41085200-41086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:41085200-41087000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:41085200-41087400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:41085200-41087400	Enhancers	Right Atrium	heart
14	chr7:41085200-41087600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:41085200-41087600	Enhancers	NH-A	brain
16	chr7:41085200-41088000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:41085200-41088000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:41085200-41088000	Enhancers	NHLF	lung
19	chr7:41085200-41088400	Enhancers	NHDF-Ad	bronchial
20	chr7:41085200-41088600	Enhancers	Fetal Muscle Leg	muscle
21	chr7:41085400-41086000	Weak transcription	Right Ventricle	heart
22	chr7:41085400-41087400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:41085400-41087400	Enhancers	Osteobl	bone
24	chr7:41085400-41087800	Enhancers	Muscle Satellite Cultured Cells	--

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