Variant report

Variant	rs28488019
Chromosome Location	chr14:69064457-69064458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69063634..69066048-chr14:69070455..69072811,2	K562	blood:
2	chr14:69058975..69063835-chr14:69063915..69067303,5	MCF-7	breast:
3	chr14:69059475..69061008-chr14:69062632..69064559,2	K562	blood:
4	chr14:69064012..69066620-chr14:69071141..69073837,2	MCF-7	breast:
5	chr14:69053718..69056599-chr14:69063479..69065769,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10133460	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483814	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56382633	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729538	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69052800-69064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:69053400-69064800	Weak transcription	Brain Substantia Nigra	brain
3	chr14:69057000-69065800	Weak transcription	Gastric	stomach
4	chr14:69057400-69064600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:69057600-69065200	Weak transcription	Lung	lung
6	chr14:69057600-69065800	Weak transcription	Left Ventricle	heart
7	chr14:69057800-69064800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:69058600-69065200	Weak transcription	Esophagus	oesophagus
9	chr14:69058800-69065000	Weak transcription	Ovary	ovary
10	chr14:69059600-69064800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:69060000-69065000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:69060200-69068200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:69060800-69064800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:69060800-69065000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:69061200-69064800	Weak transcription	NHLF	lung
16	chr14:69061200-69065000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:69061200-69065000	Weak transcription	Osteobl	bone
18	chr14:69061200-69065200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:69061200-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:69061200-69078000	Weak transcription	Fetal Heart	heart
21	chr14:69061400-69064600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:69061400-69064800	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:69061400-69064800	Weak transcription	Fetal Lung	lung
24	chr14:69061400-69064800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr14:69061400-69065000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:69061400-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:69061600-69064600	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr14:69061600-69065000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:69061600-69065800	Weak transcription	Spleen	Spleen
30	chr14:69061800-69064800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:69061800-69065000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr14:69061800-69065000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:69061800-69065200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr14:69061800-69065200	Weak transcription	Fetal Thymus	thymus
35	chr14:69061800-69065400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr14:69061800-69066600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:69061800-69070400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:69062000-69064600	Weak transcription	HMEC	breast
39	chr14:69062000-69065000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:69062200-69064600	Weak transcription	A549	lung
41	chr14:69062200-69064800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr14:69062200-69064800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:69062200-69064800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:69062200-69064800	Weak transcription	Fetal Kidney	kidney
45	chr14:69062200-69065000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr14:69062200-69065200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr14:69062200-69065200	Weak transcription	NHEK	skin
48	chr14:69062200-69065600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr14:69062200-69065800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:69062200-69073800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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