Variant report

Variant	rs10133460
Chromosome Location	chr14:69062956-69062957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69061025..69063576-chr14:69260418..69262732,3	K562	blood:
2	chr14:69061649..69064436-chr14:69261029..69262556,2	MCF-7	breast:
3	chr14:69058975..69063835-chr14:69063915..69067303,5	MCF-7	breast:
4	chr14:69059475..69061008-chr14:69062632..69064559,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10483814	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11846143	1.00[JPT][hapmap]
rs17106039	1.00[JPT][hapmap]
rs17106049	1.00[JPT][hapmap]
rs2331779	1.00[JPT][hapmap]
rs28488019	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56382633	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729538	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007479	1.00[JPT][hapmap]
rs8009151	1.00[JPT][hapmap]
rs8009865	1.00[JPT][hapmap]
rs8014901	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69049800-69064000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69052800-69064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:69053400-69064800	Weak transcription	Brain Substantia Nigra	brain
4	chr14:69054200-69063400	Weak transcription	Small Intestine	intestine
5	chr14:69057000-69065800	Weak transcription	Gastric	stomach
6	chr14:69057200-69063000	Weak transcription	Stomach Mucosa	stomach
7	chr14:69057200-69063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:69057400-69064600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:69057600-69063400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:69057600-69063400	Weak transcription	Right Atrium	heart
11	chr14:69057600-69065200	Weak transcription	Lung	lung
12	chr14:69057600-69065800	Weak transcription	Left Ventricle	heart
13	chr14:69057800-69064800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr14:69058600-69065200	Weak transcription	Esophagus	oesophagus
15	chr14:69058800-69065000	Weak transcription	Ovary	ovary
16	chr14:69059000-69063400	Weak transcription	Right Ventricle	heart
17	chr14:69059400-69063800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:69059600-69064800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:69059800-69063200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr14:69060000-69065000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:69060200-69064400	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr14:69060200-69068200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr14:69060400-69063800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:69060800-69064800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:69060800-69065000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:69061200-69063200	Weak transcription	NH-A	brain
27	chr14:69061200-69064800	Weak transcription	NHLF	lung
28	chr14:69061200-69065000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:69061200-69065000	Weak transcription	Osteobl	bone
30	chr14:69061200-69065200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:69061200-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:69061200-69078000	Weak transcription	Fetal Heart	heart
33	chr14:69061400-69063400	Weak transcription	Adipose Nuclei	Adipose
34	chr14:69061400-69063800	Weak transcription	Fetal Intestine Large	intestine
35	chr14:69061400-69064600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:69061400-69064800	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:69061400-69064800	Weak transcription	Fetal Lung	lung
38	chr14:69061400-69064800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:69061400-69065000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:69061400-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:69061600-69063400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:69061600-69063400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:69061600-69063600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr14:69061600-69064600	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr14:69061600-69065000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:69061600-69065800	Weak transcription	Spleen	Spleen
47	chr14:69061800-69063000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:69061800-69063000	Weak transcription	Pancreas	Pancrea
49	chr14:69061800-69063000	Weak transcription	Psoas Muscle	Psoas
50	chr14:69061800-69063200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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