Variant report

Variant	rs8014901
Chromosome Location	chr14:69089625-69089626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69086671..69090212-chr14:69090936..69094755,4	K562	blood:
2	chr14:69086250..69089707-chr14:69092860..69097786,7	MCF-7	breast:
3	chr14:69088224..69090068-chr14:69250540..69253091,2	MCF-7	breast:
4	chr14:69074322..69077383-chr14:69088480..69091108,3	MCF-7	breast:
5	chr14:69087589..69092834-chr14:69093343..69096451,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131921	0.82[ASN][1000 genomes]
rs10133460	1.00[JPT][hapmap]
rs10143415	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11846143	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17106015	0.91[ASN][1000 genomes]
rs17106039	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331779	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2877493	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61224239	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61987066	0.92[ASN][1000 genomes]
rs61987069	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987070	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987071	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987100	0.91[ASN][1000 genomes]
rs72729562	0.91[ASN][1000 genomes]
rs8007479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8009151	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009601	1.00[ASW][hapmap];0.98[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs8009865	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8011917	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8014901	ZBTB25	cis	parietal	SCAN
rs8014901	GPX2	cis	parietal	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69085800-69091000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69086200-69090200	Enhancers	HSMMtube	muscle
4	chr14:69086200-69091400	Enhancers	Fetal Muscle Leg	muscle
5	chr14:69086400-69090200	Enhancers	Stomach Smooth Muscle	stomach
6	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr14:69087000-69090200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr14:69087000-69098400	Weak transcription	NHLF	lung
9	chr14:69087200-69091400	Enhancers	Fetal Stomach	stomach
10	chr14:69087200-69095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:69087200-69095000	Weak transcription	Esophagus	oesophagus
12	chr14:69087400-69093800	Weak transcription	Primary B cells from cord blood	blood
13	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:69087600-69090400	Enhancers	Fetal Muscle Trunk	muscle
15	chr14:69087600-69090800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:69087800-69092800	Weak transcription	HepG2	liver
17	chr14:69088000-69090200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:69088000-69092800	Weak transcription	K562	blood
19	chr14:69088200-69090600	Enhancers	Primary T cells from cord blood	blood
20	chr14:69088200-69092000	Enhancers	Fetal Thymus	thymus
21	chr14:69088400-69092000	Weak transcription	Brain Substantia Nigra	brain
22	chr14:69088400-69093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:69088400-69093800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:69088600-69092600	Weak transcription	Fetal Heart	heart
25	chr14:69088600-69093000	Weak transcription	Fetal Lung	lung
26	chr14:69088800-69090200	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr14:69088800-69090200	Weak transcription	Small Intestine	intestine
28	chr14:69088800-69090600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:69088800-69092600	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:69088800-69093000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:69088800-69093000	Weak transcription	Brain Anterior Caudate	brain
32	chr14:69088800-69093000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr14:69088800-69093000	Weak transcription	Psoas Muscle	Psoas
34	chr14:69088800-69093200	Weak transcription	Aorta	Aorta
35	chr14:69088800-69093200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:69088800-69093800	Weak transcription	Fetal Intestine Small	intestine
37	chr14:69088800-69093800	Weak transcription	Stomach Mucosa	stomach
38	chr14:69088800-69094000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr14:69089000-69089800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:69089000-69090000	Weak transcription	Placenta	Placenta
41	chr14:69089000-69090000	Weak transcription	Right Ventricle	heart
42	chr14:69089000-69090200	Enhancers	Dnd41	blood
43	chr14:69089000-69091000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:69089000-69091200	Weak transcription	Adipose Nuclei	Adipose
45	chr14:69089000-69091800	Weak transcription	Pancreas	Pancrea
46	chr14:69089000-69092400	Weak transcription	Left Ventricle	heart
47	chr14:69089000-69092400	Weak transcription	Right Atrium	heart
48	chr14:69089000-69092800	Weak transcription	Brain Angular Gyrus	brain
49	chr14:69089000-69093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:69089000-69093000	Weak transcription	Ovary	ovary

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