Variant report

Variant	rs61987070
Chromosome Location	chr14:69088640-69088641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69086671..69090212-chr14:69090936..69094755,4	K562	blood:
2	chr14:69086250..69089707-chr14:69092860..69097786,7	MCF-7	breast:
3	chr14:69088224..69090068-chr14:69250540..69253091,2	MCF-7	breast:
4	chr14:69074322..69077383-chr14:69088480..69091108,3	MCF-7	breast:
5	chr14:69087589..69092834-chr14:69093343..69096451,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10131921	0.82[ASN][1000 genomes]
rs10143415	1.00[ASN][1000 genomes]
rs17106015	0.91[ASN][1000 genomes]
rs17106039	1.00[ASN][1000 genomes]
rs17106049	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331779	1.00[ASN][1000 genomes]
rs2877493	1.00[ASN][1000 genomes]
rs61224239	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61987066	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61987069	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987100	0.91[ASN][1000 genomes]
rs72729562	0.91[ASN][1000 genomes]
rs8007479	1.00[ASN][1000 genomes]
rs8009151	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009865	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8011917	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8014901	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69085400-69089000	Enhancers	Placenta	Placenta
2	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:69085800-69091000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:69086000-69088800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:69086000-69088800	Enhancers	Fetal Intestine Small	intestine
6	chr14:69086200-69088800	Enhancers	Psoas Muscle	Psoas
7	chr14:69086200-69089000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:69086200-69089000	Enhancers	Fetal Intestine Large	intestine
9	chr14:69086200-69090200	Enhancers	HSMMtube	muscle
10	chr14:69086200-69091400	Enhancers	Fetal Muscle Leg	muscle
11	chr14:69086400-69089000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:69086400-69090200	Enhancers	Stomach Smooth Muscle	stomach
13	chr14:69086600-69089000	Enhancers	Left Ventricle	heart
14	chr14:69086600-69089000	Enhancers	Right Atrium	heart
15	chr14:69086600-69089200	Enhancers	NHDF-Ad	bronchial
16	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr14:69087000-69089000	Enhancers	Ovary	ovary
18	chr14:69087000-69090200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr14:69087000-69098400	Weak transcription	NHLF	lung
20	chr14:69087200-69091400	Enhancers	Fetal Stomach	stomach
21	chr14:69087200-69095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:69087200-69095000	Weak transcription	Esophagus	oesophagus
23	chr14:69087400-69093800	Weak transcription	Primary B cells from cord blood	blood
24	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:69087600-69089000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr14:69087600-69089000	Enhancers	Right Ventricle	heart
27	chr14:69087600-69089600	Weak transcription	HSMM	muscle
28	chr14:69087600-69090400	Enhancers	Fetal Muscle Trunk	muscle
29	chr14:69087600-69090800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:69087800-69088800	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:69087800-69089000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:69087800-69092800	Weak transcription	HepG2	liver
33	chr14:69088000-69088800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:69088000-69088800	Enhancers	Brain Anterior Caudate	brain
35	chr14:69088000-69088800	Enhancers	Small Intestine	intestine
36	chr14:69088000-69088800	Enhancers	Stomach Mucosa	stomach
37	chr14:69088000-69088800	Enhancers	Osteobl	bone
38	chr14:69088000-69089000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:69088000-69089000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:69088000-69089200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr14:69088000-69089400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr14:69088000-69089400	Weak transcription	Thymus	Thymus
43	chr14:69088000-69090200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:69088000-69092800	Weak transcription	K562	blood
45	chr14:69088200-69088800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:69088200-69088800	Enhancers	Aorta	Aorta
47	chr14:69088200-69088800	Enhancers	Brain Hippocampus Middle	brain
48	chr14:69088200-69088800	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr14:69088200-69089000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:69088200-69089000	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links