Variant report

Variant	rs61224239
Chromosome Location	chr14:69082625-69082626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10143415	0.92[ASN][1000 genomes]
rs17106015	0.83[ASN][1000 genomes]
rs17106039	0.92[ASN][1000 genomes]
rs17106049	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2331779	0.92[ASN][1000 genomes]
rs2877493	0.92[ASN][1000 genomes]
rs61987066	1.00[ASN][1000 genomes]
rs61987069	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61987070	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61987071	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61987100	0.83[ASN][1000 genomes]
rs72729562	0.83[ASN][1000 genomes]
rs8007479	0.92[ASN][1000 genomes]
rs8009151	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8009865	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011917	0.92[ASN][1000 genomes]
rs8014901	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381936	chr14:69082322-69082759	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69079200-69085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69079400-69083200	Weak transcription	Fetal Heart	heart
3	chr14:69080400-69084600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:69081800-69084800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:69082400-69085800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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