Variant report

Variant	rs2331779
Chromosome Location	chr14:69081917-69081918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69078810..69080489-chr14:69081085..69082611,2	MCF-7	breast:
2	chr14:69081849..69083731-chr14:69281900..69284171,2	MCF-7	breast:
3	chr14:69073812..69075425-chr14:69080872..69083380,2	MCF-7	breast:
4	chr14:69076773..69079330-chr14:69081666..69084664,2	K562	blood:
5	chr14:69080038..69083035-chr14:69093013..69095966,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131921	0.82[ASN][1000 genomes]
rs10133460	1.00[JPT][hapmap]
rs10143415	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846143	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17106015	0.91[ASN][1000 genomes]
rs17106039	0.86[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106049	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2877493	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61224239	0.92[ASN][1000 genomes]
rs61987066	0.92[ASN][1000 genomes]
rs61987069	1.00[ASN][1000 genomes]
rs61987070	1.00[ASN][1000 genomes]
rs61987071	1.00[ASN][1000 genomes]
rs61987100	0.91[ASN][1000 genomes]
rs72729562	0.91[ASN][1000 genomes]
rs8007479	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009151	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8009601	0.86[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs8009865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8011917	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014901	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2331779	ZBTB25	cis	parietal	SCAN
rs2331779	GPX2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69079200-69085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69079400-69083200	Weak transcription	Fetal Heart	heart
3	chr14:69080400-69084600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:69081600-69082400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:69081800-69084800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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