Variant report

Variant	rs8009601
Chromosome Location	chr14:69090756-69090757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69074322..69077383-chr14:69088480..69091108,3	MCF-7	breast:
2	chr14:69089901..69091481-chr14:69094404..69096026,2	MCF-7	breast:
3	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
4	chr14:69087589..69092834-chr14:69093343..69096451,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10143415	0.89[AFR][1000 genomes]
rs10143428	1.00[CHB][hapmap]
rs10149893	1.00[CHB][hapmap]
rs10438159	0.87[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11623966	1.00[CHB][hapmap]
rs11627234	1.00[CHB][hapmap]
rs11628293	1.00[CHB][hapmap]
rs11629144	1.00[CHB][hapmap]
rs11847037	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848320	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs11850918	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106039	1.00[ASW][hapmap];0.98[LWK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes]
rs17106049	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17106069	1.00[CHB][hapmap]
rs17756651	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs17829281	1.00[CHB][hapmap]
rs17834977	1.00[CHB][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17835116	0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs17835200	0.88[TSI][hapmap]
rs1884809	1.00[ASN][1000 genomes]
rs2145156	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs2331779	0.86[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2877493	0.89[AFR][1000 genomes]
rs4420467	1.00[CHB][hapmap]
rs4516148	1.00[CHB][hapmap]
rs55779318	0.81[EUR][1000 genomes]
rs55877285	0.81[EUR][1000 genomes]
rs56070472	0.81[EUR][1000 genomes]
rs59884829	1.00[ASN][1000 genomes]
rs61987106	0.91[EUR][1000 genomes]
rs61987107	0.81[EUR][1000 genomes]
rs61987114	0.81[EUR][1000 genomes]
rs61987120	0.81[EUR][1000 genomes]
rs7140546	1.00[CHB][hapmap]
rs7143663	1.00[CHB][hapmap]
rs739874	1.00[CHB][hapmap]
rs8007479	0.96[AFR][1000 genomes]
rs8009151	1.00[ASW][hapmap];0.98[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs8009398	1.00[CHB][hapmap]
rs8009865	0.82[AFR][1000 genomes]
rs8014901	1.00[ASW][hapmap];0.98[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs8017092	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999737	1.00[CHB][hapmap]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69085800-69091000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69086200-69091400	Enhancers	Fetal Muscle Leg	muscle
4	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:69087000-69098400	Weak transcription	NHLF	lung
6	chr14:69087200-69091400	Enhancers	Fetal Stomach	stomach
7	chr14:69087200-69095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:69087200-69095000	Weak transcription	Esophagus	oesophagus
9	chr14:69087400-69093800	Weak transcription	Primary B cells from cord blood	blood
10	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:69087600-69090800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:69087800-69092800	Weak transcription	HepG2	liver
13	chr14:69088000-69092800	Weak transcription	K562	blood
14	chr14:69088200-69092000	Enhancers	Fetal Thymus	thymus
15	chr14:69088400-69092000	Weak transcription	Brain Substantia Nigra	brain
16	chr14:69088400-69093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:69088400-69093800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:69088600-69092600	Weak transcription	Fetal Heart	heart
19	chr14:69088600-69093000	Weak transcription	Fetal Lung	lung
20	chr14:69088800-69092600	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:69088800-69093000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:69088800-69093000	Weak transcription	Brain Anterior Caudate	brain
23	chr14:69088800-69093000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:69088800-69093000	Weak transcription	Psoas Muscle	Psoas
25	chr14:69088800-69093200	Weak transcription	Aorta	Aorta
26	chr14:69088800-69093200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:69088800-69093800	Weak transcription	Fetal Intestine Small	intestine
28	chr14:69088800-69093800	Weak transcription	Stomach Mucosa	stomach
29	chr14:69088800-69094000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:69089000-69091000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:69089000-69091200	Weak transcription	Adipose Nuclei	Adipose
32	chr14:69089000-69091800	Weak transcription	Pancreas	Pancrea
33	chr14:69089000-69092400	Weak transcription	Left Ventricle	heart
34	chr14:69089000-69092400	Weak transcription	Right Atrium	heart
35	chr14:69089000-69092800	Weak transcription	Brain Angular Gyrus	brain
36	chr14:69089000-69093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:69089000-69093000	Weak transcription	Ovary	ovary
38	chr14:69089000-69094000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:69089000-69094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:69089000-69094000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:69089000-69094000	Weak transcription	Fetal Intestine Large	intestine
42	chr14:69089200-69092800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr14:69089200-69092800	Weak transcription	NHDF-Ad	bronchial
44	chr14:69089400-69090800	Enhancers	GM12878-XiMat	blood
45	chr14:69089400-69094200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:69090000-69094800	Enhancers	Placenta	Placenta
47	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:69090200-69092800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr14:69090200-69093000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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