Variant report

Variant	rs8009398
Chromosome Location	chr14:69106333-69106334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69104267..69107230-chr14:69123816..69125821,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP36L1-7	chr14:69106285-69107671	l_1004_NR_024630

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap]
rs10149893	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151145	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623966	1.00[CHB][hapmap]
rs11627234	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11628293	1.00[CHB][hapmap]
rs11629144	1.00[CHB][hapmap]
rs17106069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17829281	1.00[CHB][hapmap]
rs17834977	1.00[CHB][hapmap]
rs4420467	1.00[CHB][hapmap]
rs4516148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61095830	0.81[EUR][1000 genomes]
rs7140546	1.00[CHB][hapmap]
rs7143663	1.00[CHB][hapmap]
rs739874	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap]
rs999737	1.00[CHB][hapmap]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69095600-69107400	Enhancers	Fetal Stomach	stomach
3	chr14:69095800-69107800	Weak transcription	Fetal Brain Female	brain
4	chr14:69100800-69107000	Weak transcription	Small Intestine	intestine
5	chr14:69100800-69107800	Weak transcription	Primary B cells from cord blood	blood
6	chr14:69101200-69106400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:69101200-69106400	Enhancers	Brain Anterior Caudate	brain
8	chr14:69102600-69106400	Enhancers	Brain Hippocampus Middle	brain
9	chr14:69102600-69106600	Enhancers	Colon Smooth Muscle	Colon
10	chr14:69102800-69106400	Enhancers	Fetal Kidney	kidney
11	chr14:69102800-69106400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr14:69102800-69106600	Enhancers	Fetal Thymus	thymus
13	chr14:69103000-69106400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:69103400-69106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:69103400-69106400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:69103400-69106600	Enhancers	Placenta	Placenta
17	chr14:69103400-69106800	Enhancers	Fetal Muscle Trunk	muscle
18	chr14:69103600-69106400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:69103600-69106400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:69103800-69106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:69103800-69106400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr14:69103800-69106400	Enhancers	Right Atrium	heart
23	chr14:69104000-69106400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:69104000-69106400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:69104000-69106400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr14:69104000-69106400	Enhancers	Adipose Nuclei	Adipose
27	chr14:69104000-69106400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr14:69104000-69106400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr14:69104000-69106400	Enhancers	NHDF-Ad	bronchial
30	chr14:69104000-69106800	Enhancers	Left Ventricle	heart
31	chr14:69104200-69106600	Enhancers	Fetal Heart	heart
32	chr14:69104200-69106600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr14:69104400-69106400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr14:69104400-69106400	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr14:69104400-69106400	Enhancers	HSMMtube	muscle
36	chr14:69104400-69106600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr14:69104400-69106800	Enhancers	Ovary	ovary
38	chr14:69104400-69107000	Enhancers	Psoas Muscle	Psoas
39	chr14:69104600-69106400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:69104600-69107000	Enhancers	Right Ventricle	heart
41	chr14:69105000-69106400	Enhancers	Spleen	Spleen
42	chr14:69105000-69107200	Weak transcription	NHEK	skin
43	chr14:69105000-69121600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:69105200-69106400	Enhancers	H1 Cell Line	embryonic stem cell
45	chr14:69105400-69106600	Enhancers	Fetal Lung	lung
46	chr14:69105600-69113000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr14:69105800-69106400	Enhancers	Fetal Brain Male	brain
48	chr14:69105800-69106600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr14:69105800-69106800	Weak transcription	Colonic Mucosa	Colon
50	chr14:69105800-69113200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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