Variant report

Variant	rs11628293
Chromosome Location	chr14:69037320-69037321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68979483..68980014-chr14:69036782..69037375,2	MCF-7	breast:
2	chr14:69034895..69037596-chr14:69073887..69076844,4	MCF-7	breast:
3	chr14:68935153..68936558-chr14:69036466..69037324,5	MCF-7	breast:
4	chr14:68871074..68871904-chr14:69036575..69037371,3	MCF-7	breast:
5	chr14:68925458..68926396-chr14:69036429..69037582,24	MCF-7	breast:
6	chr14:68773160..68773981-chr14:69036442..69037417,3	MCF-7	breast:
7	chr14:68925011..68926542-chr14:69036351..69037638,115	MCF-7	breast:
8	chr14:68934627..68937001-chr14:69034855..69037345,2	MCF-7	breast:
9	chr14:69008510..69012308-chr14:69035243..69038213,3	MCF-7	breast:
10	chr14:68772189..68774802-chr14:69035242..69038239,3	MCF-7	breast:
11	chr14:68860251..68860757-chr14:69036803..69037354,2	MCF-7	breast:
12	chr14:68925384..68926509-chr14:69036388..69037482,52	MCF-7	breast:
13	chr14:68924273..68927929-chr14:69034368..69037492,4	MCF-7	breast:
14	chr14:69027264..69032673-chr14:69034374..69038789,10	MCF-7	breast:
15	chr14:69020493..69021399-chr14:69036539..69037377,10	MCF-7	breast:
16	chr14:68871110..68871972-chr14:69036474..69037372,4	MCF-7	breast:
17	chr14:69036779..69038286-chr14:69038694..69040198,2	MCF-7	breast:
18	chr14:69020493..69021482-chr14:69036415..69037377,20	MCF-7	breast:
19	chr14:69037050..69041400-chr14:69041759..69045325,4	MCF-7	breast:
20	chr14:68925379..68928137-chr14:69035379..69037742,2	MCF-7	breast:
21	chr14:69028863..69039900-chr14:69256962..69265663,39	MCF-7	breast:
22	chr14:68644130..68645077-chr14:69036391..69037451,11	MCF-7	breast:
23	chr14:69035875..69039894-chr14:69250533..69252732,3	MCF-7	breast:
24	chr14:69034578..69039415-chr14:69094170..69096793,5	MCF-7	breast:
25	chr14:69020386..69021361-chr14:69036539..69037509,4	MCF-7	breast:
26	chr14:68746918..68749020-chr14:69036355..69038421,2	MCF-7	breast:
27	chr14:68939794..68940420-chr14:69036537..69037385,5	MCF-7	breast:
28	chr14:69036750..69039509-chr14:69055628..69057571,2	MCF-7	breast:
29	chr14:69027748..69038857-chr14:69257974..69264472,24	MCF-7	breast:
30	chr14:69037043..69039737-chr5:178416240..178417937,2	MCF-7	breast:
31	chr14:68773160..68774014-chr14:69036442..69037399,5	MCF-7	breast:
32	chr14:68935153..68936558-chr14:69036476..69037324,3	MCF-7	breast:
33	chr14:68776230..68777818-chr14:69035775..69037380,2	MCF-7	breast:
34	chr14:69006233..69007064-chr14:69036424..69037353,2	MCF-7	breast:
35	chr14:69036141..69039001-chr14:69250831..69253472,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000259038	Chromatin interaction
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap]
rs10149893	1.00[CHB][hapmap]
rs10483812	0.95[CEU][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10483813	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11621276	0.95[CEU][hapmap];0.89[AMR][1000 genomes]
rs11623966	1.00[CHB][hapmap]
rs11624097	0.90[CEU][hapmap];0.82[AMR][1000 genomes]
rs11624164	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs11624333	0.90[CEU][hapmap];0.82[AMR][1000 genomes]
rs11627234	1.00[CHB][hapmap]
rs11629144	1.00[CHB][hapmap]
rs12889251	0.95[CEU][hapmap];0.89[AMR][1000 genomes]
rs17106069	1.00[CHB][hapmap]
rs17755925	0.95[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17756000	0.95[CEU][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17756147	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17828907	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17828955	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17829281	1.00[CHB][hapmap]
rs17834977	1.00[CHB][hapmap]
rs2158357	0.95[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34636650	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4420467	1.00[CHB][hapmap]
rs4516148	1.00[CHB][hapmap]
rs7140546	1.00[CHB][hapmap]
rs71423314	0.87[AMR][1000 genomes]
rs71423316	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71423317	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71423318	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7143663	1.00[CHB][hapmap]
rs739874	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8009398	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap]
rs999737	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69030800-69041600	Weak transcription	NHLF	lung
2	chr14:69031200-69041800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69032400-69041400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:69032800-69040800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:69033000-69039600	Weak transcription	Primary T cells from cord blood	blood
6	chr14:69033200-69041600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:69033400-69039400	Weak transcription	Spleen	Spleen
8	chr14:69033600-69041600	Weak transcription	Hela-S3	cervix
9	chr14:69034400-69037800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:69034400-69038000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:69035000-69037400	Enhancers	Brain Anterior Caudate	brain
12	chr14:69035000-69037400	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr14:69035000-69039400	Enhancers	Pancreas	Pancrea
14	chr14:69035200-69037400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:69035200-69037400	Enhancers	Adipose Nuclei	Adipose
16	chr14:69035200-69038000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:69035400-69037800	Enhancers	HUVEC	blood vessel
18	chr14:69035400-69039200	Enhancers	Liver	Liver
19	chr14:69035600-69037400	Enhancers	Fetal Muscle Leg	muscle
20	chr14:69035600-69037400	Enhancers	Placenta	Placenta
21	chr14:69035600-69037400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr14:69035600-69037600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:69035600-69037600	Enhancers	Fetal Thymus	thymus
24	chr14:69035600-69037800	Enhancers	Lung	lung
25	chr14:69035800-69037400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:69035800-69037400	Enhancers	Fetal Kidney	kidney
27	chr14:69035800-69037400	Enhancers	Fetal Lung	lung
28	chr14:69035800-69037400	Enhancers	Fetal Muscle Trunk	muscle
29	chr14:69036000-69037400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr14:69036200-69037400	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:69036400-69037400	Enhancers	Fetal Heart	heart
32	chr14:69036400-69037400	Enhancers	Right Ventricle	heart
33	chr14:69036400-69041000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr14:69036600-69039800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:69036800-69038000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:69036800-69041400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr14:69036800-69052000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr14:69037000-69037400	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:69037000-69039600	Enhancers	HepG2	liver
40	chr14:69037000-69039800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr14:69037000-69041600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr14:69037000-69041600	Weak transcription	Psoas Muscle	Psoas
43	chr14:69037000-69041800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:69037000-69042000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:69037000-69052600	Weak transcription	Colonic Mucosa	Colon
46	chr14:69037200-69037400	Enhancers	Brain Substantia Nigra	brain
47	chr14:69037200-69037400	Enhancers	Gastric	stomach
48	chr14:69037200-69039000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:69037200-69040400	Weak transcription	Brain Hippocampus Middle	brain
50	chr14:69037200-69041600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links