Variant report

Variant	rs11629144
Chromosome Location	chr14:69131593-69131594
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69131429..69134144-chr14:69139258..69141880,2	MCF-7	breast:
2	chr14:69128890..69132387-chr14:69257388..69259950,3	K562	blood:
3	chr14:69113345..69115393-chr14:69129632..69132510,2	K562	blood:
4	chr14:69130934..69132672-chr14:69136285..69137846,2	MCF-7	breast:
5	chr14:69128588..69133050-chr14:69253079..69257196,5	MCF-7	breast:
6	chr14:69125365..69129113-chr14:69131189..69133426,4	MCF-7	breast:
7	chr14:69130068..69132761-chr14:69260724..69262933,2	MCF-7	breast:
8	chr14:69130772..69132590-chr14:69251342..69252982,2	MCF-7	breast:
9	chr14:69122826..69132436-chr14:69256721..69264610,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10149893	1.00[CHB][hapmap]
rs11623966	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627234	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628293	1.00[CHB][hapmap]
rs11846143	0.88[GIH][hapmap]
rs17106069	1.00[CHB][hapmap]
rs17829281	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17834977	1.00[CHB][hapmap]
rs2145151	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4420467	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[ASN][1000 genomes]
rs4516148	1.00[CHB][hapmap]
rs61095830	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143663	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs739874	1.00[CHB][hapmap]
rs8009398	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap]
rs999737	1.00[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11629144	FUT8	cis	cerebellum	SCAN
rs11629144	ACTN1	cis	parietal	SCAN

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69122000-69136000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:69122800-69133600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:69122800-69133800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:69123000-69137800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:69124800-69131800	Enhancers	Spleen	Spleen
7	chr14:69126600-69133000	Weak transcription	Gastric	stomach
8	chr14:69126600-69135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:69126600-69136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:69126800-69131800	Weak transcription	Fetal Intestine Large	intestine
11	chr14:69127000-69132400	Weak transcription	Fetal Thymus	thymus
12	chr14:69127400-69133600	Weak transcription	Pancreas	Pancrea
13	chr14:69128000-69134400	Enhancers	Fetal Heart	heart
14	chr14:69128200-69131800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:69128400-69135200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr14:69128400-69137800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:69128600-69136400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:69128800-69135000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr14:69129000-69131800	Weak transcription	Aorta	Aorta
20	chr14:69129000-69140200	Enhancers	NHDF-Ad	bronchial
21	chr14:69129200-69132800	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:69129200-69133200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:69129200-69137600	Enhancers	NHLF	lung
24	chr14:69129200-69140000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:69129400-69132600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:69129600-69131600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:69129800-69140600	Enhancers	Colon Smooth Muscle	Colon
28	chr14:69130000-69133600	Weak transcription	Lung	lung
29	chr14:69130000-69134400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr14:69130000-69135000	Enhancers	Adipose Nuclei	Adipose
31	chr14:69130200-69131800	Enhancers	Brain Hippocampus Middle	brain
32	chr14:69130200-69132600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:69130200-69133800	Enhancers	Ovary	ovary
34	chr14:69130200-69135800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:69130400-69131600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr14:69130400-69131600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr14:69130400-69131600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr14:69130400-69131800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr14:69130400-69133000	Enhancers	HSMM	muscle
40	chr14:69130400-69139600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr14:69130600-69131600	Enhancers	Primary T cells fromperipheralblood	blood
42	chr14:69130600-69131600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:69130600-69131600	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr14:69130600-69131600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr14:69130600-69131600	Weak transcription	Colonic Mucosa	Colon
46	chr14:69130600-69131800	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr14:69130600-69131800	Enhancers	Liver	Liver
48	chr14:69130600-69132000	Enhancers	Duodenum Mucosa	Duodenum
49	chr14:69130600-69135600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:69130600-69136000	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links