Variant report

Variant	rs17106069
Chromosome Location	chr14:69097416-69097417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr14:69097394-69097658	HepG2	liver:	n/a	chr14:69097549-69097560
2	USF2	chr14:69097271-69097722	HepG2	liver:	n/a	n/a
3	USF1	chr14:69097389-69097655	HepG2	liver:	n/a	chr14:69097549-69097560
4	HNF4A	chr14:69097401-69097654	HepG2	liver:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69097412..69100188-chr14:69261786..69263950,2	K562	blood:
2	chr14:69096480..69098548-chr14:69114261..69117123,2	MCF-7	breast:
3	chr14:69095981..69098144-chr14:69121077..69123082,2	MCF-7	breast:
4	chr14:69095355..69099854-chr14:69250960..69255583,6	MCF-7	breast:
5	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
6	chr14:69097335..69097855-chr8:125486124..125486930,2	Hela-S3	cervix:
7	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
8	chr14:69095873..69098018-chr14:69098588..69100398,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259038	TF binding region
ENSG00000185650	Chromatin interaction
ENSG00000245149	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap]
rs10149893	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151145	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623966	1.00[CHB][hapmap]
rs11627234	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs11628293	1.00[CHB][hapmap]
rs11629144	1.00[CHB][hapmap]
rs17829281	1.00[CHB][hapmap]
rs17834977	1.00[CHB][hapmap]
rs4420467	1.00[CHB][hapmap]
rs4516148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140546	1.00[CHB][hapmap]
rs7143663	1.00[CHB][hapmap]
rs739874	1.00[CHB][hapmap]
rs8009398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009601	1.00[CHB][hapmap]
rs999737	1.00[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17106069	C14orf181	cis	parietal	SCAN
rs17106069	ACTN1	cis	parietal	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:69087000-69098400	Weak transcription	NHLF	lung
3	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
4	chr14:69092400-69101400	Enhancers	Right Atrium	heart
5	chr14:69092800-69098800	Enhancers	HepG2	liver
6	chr14:69093000-69104400	Enhancers	Fetal Lung	lung
7	chr14:69093400-69099400	Weak transcription	Lung	lung
8	chr14:69093400-69099400	Weak transcription	Psoas Muscle	Psoas
9	chr14:69093400-69099800	Weak transcription	NHDF-Ad	bronchial
10	chr14:69094200-69099800	Weak transcription	HSMMtube	muscle
11	chr14:69094400-69098200	Weak transcription	Ovary	ovary
12	chr14:69094400-69098200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr14:69094400-69098400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:69094400-69099800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr14:69094600-69097800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:69095000-69100400	Weak transcription	Fetal Kidney	kidney
17	chr14:69095200-69104200	Weak transcription	NH-A	brain
18	chr14:69095200-69104400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:69095400-69098400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:69095400-69099400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:69095400-69099800	Weak transcription	Osteobl	bone
22	chr14:69095600-69097600	Enhancers	K562	blood
23	chr14:69095600-69098800	Enhancers	Stomach Smooth Muscle	stomach
24	chr14:69095600-69099800	Enhancers	Brain Hippocampus Middle	brain
25	chr14:69095600-69100000	Enhancers	Brain Cingulate Gyrus	brain
26	chr14:69095600-69100000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr14:69095600-69100200	Weak transcription	Small Intestine	intestine
28	chr14:69095600-69107400	Enhancers	Fetal Stomach	stomach
29	chr14:69095800-69097800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr14:69095800-69097800	Enhancers	Pancreas	Pancrea
31	chr14:69095800-69098800	Enhancers	Fetal Intestine Large	intestine
32	chr14:69095800-69100000	Enhancers	Brain Anterior Caudate	brain
33	chr14:69095800-69100200	Weak transcription	Brain Germinal Matrix	brain
34	chr14:69095800-69100400	Enhancers	Brain Substantia Nigra	brain
35	chr14:69095800-69101000	Enhancers	Stomach Mucosa	stomach
36	chr14:69095800-69101200	Enhancers	Placenta	Placenta
37	chr14:69095800-69104400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:69095800-69107800	Weak transcription	Fetal Brain Female	brain
39	chr14:69096000-69098400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:69096000-69098400	Enhancers	Fetal Intestine Small	intestine
41	chr14:69096000-69098800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:69096000-69099400	Weak transcription	Primary B cells from cord blood	blood
43	chr14:69096000-69100200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr14:69096000-69100400	Enhancers	Rectal Smooth Muscle	rectum
45	chr14:69096000-69101400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:69096000-69101600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr14:69096200-69098400	Enhancers	Liver	Liver
48	chr14:69096200-69099800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr14:69096200-69099800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr14:69096200-69099800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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