Variant report

Variant	rs11623966
Chromosome Location	chr14:69134530-69134531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69134420..69136018-chr14:69260973..69262478,2	MCF-7	breast:
2	chr14:69134295..69136802-chr14:69251321..69253265,2	MCF-7	breast:
3	chr14:69109174..69112186-chr14:69134021..69137562,3	MCF-7	breast:
4	chr14:69132944..69134803-chr14:69260972..69264129,3	MCF-7	breast:
5	chr14:69134172..69139010-chr14:69141375..69149578,10	MCF-7	breast:
6	chr14:69133832..69136343-chr14:69137612..69140820,3	K562	blood:
7	chr14:68717220..68719898-chr14:69134172..69135890,2	MCF-7	breast:
8	chr14:69094527..69096437-chr14:69133995..69136372,2	MCF-7	breast:
9	chr14:69123995..69127271-chr14:69134503..69138047,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10149893	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11627234	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628293	1.00[CHB][hapmap]
rs11629144	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106069	1.00[CHB][hapmap]
rs17829281	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17834977	1.00[CHB][hapmap]
rs2145151	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4420467	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4516148	1.00[CHB][hapmap]
rs61095830	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140546	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143663	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs739874	1.00[CHB][hapmap]
rs8009398	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap]
rs999737	1.00[CHB][hapmap]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69122000-69136000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:69123000-69137800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:69126600-69135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:69126600-69136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:69128400-69135200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:69128400-69137800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:69128600-69136400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69128800-69135000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr14:69129000-69140200	Enhancers	NHDF-Ad	bronchial
11	chr14:69129200-69137600	Enhancers	NHLF	lung
12	chr14:69129200-69140000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:69129800-69140600	Enhancers	Colon Smooth Muscle	Colon
14	chr14:69130000-69135000	Enhancers	Adipose Nuclei	Adipose
15	chr14:69130200-69135800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr14:69130400-69139600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:69130600-69135600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:69130600-69136000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:69130600-69137800	Enhancers	HSMMtube	muscle
20	chr14:69130600-69140000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:69130600-69140000	Enhancers	Rectal Smooth Muscle	rectum
22	chr14:69131000-69134800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:69131000-69134800	Enhancers	NH-A	brain
24	chr14:69131000-69135200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:69131000-69137600	Enhancers	Fetal Lung	lung
26	chr14:69131200-69138000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr14:69131200-69138400	Enhancers	Placenta	Placenta
28	chr14:69131200-69139800	Enhancers	Fetal Stomach	stomach
29	chr14:69131200-69140600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:69131400-69135200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr14:69131600-69135800	Weak transcription	Brain Anterior Caudate	brain
32	chr14:69131600-69136000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:69131800-69134600	Weak transcription	Esophagus	oesophagus
34	chr14:69131800-69134800	Enhancers	Fetal Intestine Large	intestine
35	chr14:69131800-69135000	Weak transcription	Spleen	Spleen
36	chr14:69131800-69135600	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:69132000-69135000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:69132400-69136600	Enhancers	Fetal Thymus	thymus
39	chr14:69132400-69141400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:69132600-69134600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr14:69132600-69135000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:69132800-69136000	Weak transcription	Left Ventricle	heart
43	chr14:69132800-69136000	Weak transcription	Right Ventricle	heart
44	chr14:69132800-69136400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:69132800-69136400	Weak transcription	Colonic Mucosa	Colon
46	chr14:69133000-69135600	Weak transcription	Fetal Kidney	kidney
47	chr14:69133200-69136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr14:69133400-69134600	Weak transcription	Small Intestine	intestine
49	chr14:69133400-69136000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:69133400-69138000	Enhancers	Stomach Mucosa	stomach

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