Variant report

Variant	rs7143663
Chromosome Location	chr14:69056761-69056762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69042225..69044616-chr14:69056393..69058325,2	MCF-7	breast:
2	chr14:69036750..69039509-chr14:69055628..69057571,2	MCF-7	breast:
3	chr14:68930105..68933005-chr14:69055424..69057874,3	MCF-7	breast:
4	chr14:69055857..69058833-chr14:69094583..69097489,2	MCF-7	breast:
5	chr14:69032430..69035080-chr14:69056071..69058771,2	MCF-7	breast:
6	chr14:69054452..69058686-chr14:69249853..69254831,4	MCF-7	breast:
7	chr14:69056722..69058662-chr14:69255597..69257202,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10149893	1.00[CHB][hapmap]
rs11623966	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11627234	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11628293	1.00[CHB][hapmap]
rs11629144	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17106069	1.00[CHB][hapmap]
rs17829281	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17834977	1.00[CHB][hapmap]
rs2145151	1.00[ASN][1000 genomes]
rs4420467	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4516148	1.00[CHB][hapmap]
rs61095830	1.00[ASN][1000 genomes]
rs7140546	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs739874	1.00[CHB][hapmap]
rs8009398	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap]
rs999737	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69047400-69060200	Weak transcription	Spleen	Spleen
2	chr14:69049800-69064000	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69050200-69058800	Enhancers	Fetal Muscle Trunk	muscle
4	chr14:69050200-69058800	Enhancers	Placenta	Placenta
5	chr14:69051000-69057000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:69051000-69057000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:69051200-69058200	Enhancers	NHDF-Ad	bronchial
8	chr14:69051200-69061800	Enhancers	Fetal Stomach	stomach
9	chr14:69051400-69057200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:69051400-69057400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:69051400-69058000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr14:69051600-69057200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr14:69051800-69057600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr14:69052000-69057600	Enhancers	Fetal Lung	lung
15	chr14:69052000-69057800	Enhancers	Colon Smooth Muscle	Colon
16	chr14:69052200-69058000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:69052600-69057400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr14:69052600-69057800	Enhancers	Adipose Nuclei	Adipose
19	chr14:69052600-69060400	Weak transcription	Osteobl	bone
20	chr14:69052800-69057000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:69052800-69059600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:69052800-69064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:69053000-69056800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:69053400-69056800	Weak transcription	Pancreas	Pancrea
25	chr14:69053400-69064800	Weak transcription	Brain Substantia Nigra	brain
26	chr14:69053600-69056800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr14:69053600-69057800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:69053800-69056800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr14:69053800-69056800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr14:69053800-69057000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr14:69053800-69057200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:69053800-69057200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr14:69053800-69057200	Enhancers	Fetal Heart	heart
34	chr14:69053800-69057600	Enhancers	Left Ventricle	heart
35	chr14:69053800-69057600	Enhancers	Right Atrium	heart
36	chr14:69053800-69057600	Enhancers	HSMMtube	muscle
37	chr14:69054000-69057400	Enhancers	Fetal Kidney	kidney
38	chr14:69054200-69063400	Weak transcription	Small Intestine	intestine
39	chr14:69054400-69060400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:69054600-69056800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr14:69054600-69060400	Weak transcription	Fetal Brain Male	brain
42	chr14:69054600-69061000	Weak transcription	NHEK	skin
43	chr14:69054800-69057000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr14:69054800-69060200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:69054800-69060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:69054800-69060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:69054800-69060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:69054800-69061400	Enhancers	Rectal Smooth Muscle	rectum
49	chr14:69055000-69060200	Weak transcription	Fetal Brain Female	brain
50	chr14:69055200-69060400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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