Variant report

Variant	rs61095830
Chromosome Location	chr14:69120073-69120074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69094141..69095767-chr14:69119019..69121278,2	MCF-7	breast:
2	chr14:69118549..69120468-chr14:69255741..69258474,2	MCF-7	breast:
3	chr14:69113799..69116551-chr14:69119650..69121354,2	K562	blood:
4	chr14:68716843..68718749-chr14:69119159..69120912,2	MCF-7	breast:
5	chr14:69111300..69112991-chr14:69119803..69122665,2	MCF-7	breast:
6	chr14:69119565..69122267-chr14:69260745..69262641,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10143428	1.00[ASN][1000 genomes]
rs10149893	0.83[EUR][1000 genomes]
rs10151145	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11623966	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627234	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629144	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17829281	1.00[ASN][1000 genomes]
rs2145151	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4420467	1.00[ASN][1000 genomes]
rs4516148	0.81[EUR][1000 genomes]
rs7140546	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143663	1.00[ASN][1000 genomes]
rs8009398	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69105000-69121600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:69112000-69121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:69113200-69121600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:69114000-69121200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:69115200-69123400	Enhancers	Colon Smooth Muscle	Colon
7	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
8	chr14:69115800-69120800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:69115800-69121600	Weak transcription	Small Intestine	intestine
10	chr14:69116000-69120800	Weak transcription	Fetal Thymus	thymus
11	chr14:69116000-69123600	Enhancers	Ovary	ovary
12	chr14:69116600-69121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:69117000-69124000	Enhancers	Rectal Smooth Muscle	rectum
14	chr14:69117200-69120800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:69117600-69121200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:69117800-69122400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr14:69118200-69121600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr14:69118400-69121400	Weak transcription	Primary T cells from cord blood	blood
19	chr14:69118400-69121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:69118600-69121400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:69118600-69121800	Weak transcription	Liver	Liver
22	chr14:69118800-69120600	Weak transcription	Gastric	stomach
23	chr14:69118800-69121200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:69118800-69121200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:69118800-69121200	Weak transcription	HepG2	liver
26	chr14:69118800-69121400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:69118800-69121400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:69118800-69121400	Weak transcription	NH-A	brain
29	chr14:69118800-69122000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:69119000-69121200	Weak transcription	HSMMtube	muscle
31	chr14:69119000-69122600	Weak transcription	A549	lung
32	chr14:69119000-69125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:69119200-69120400	Weak transcription	Spleen	Spleen
34	chr14:69119200-69121200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:69119200-69121200	Weak transcription	HSMM	muscle
36	chr14:69119400-69120600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr14:69119400-69121000	Weak transcription	Fetal Intestine Small	intestine
38	chr14:69119400-69121000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr14:69119400-69121000	Weak transcription	Pancreas	Pancrea
40	chr14:69119400-69121000	Weak transcription	Right Ventricle	heart
41	chr14:69119400-69121200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:69119400-69121200	Weak transcription	Fetal Intestine Large	intestine
43	chr14:69119400-69121200	Weak transcription	Left Ventricle	heart
44	chr14:69119400-69121200	Weak transcription	Lung	lung
45	chr14:69119400-69121200	Weak transcription	Right Atrium	heart
46	chr14:69119400-69121600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr14:69119400-69121600	Weak transcription	Esophagus	oesophagus
48	chr14:69119400-69121800	Weak transcription	Psoas Muscle	Psoas
49	chr14:69119600-69120600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr14:69119600-69120600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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