Variant report

Variant	rs10143428
Chromosome Location	chr14:69118798-69118799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69116897..69119206-chr14:69123496..69125960,2	MCF-7	breast:
2	chr14:69113122..69115915-chr14:69116555..69118938,2	K562	blood:
3	chr14:69117709..69119470-chr14:69122795..69124704,2	K562	blood:
4	chr14:69118549..69120468-chr14:69255741..69258474,2	MCF-7	breast:
5	chr14:69115935..69118979-chr14:69121407..69123459,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10149893	1.00[CHB][hapmap]
rs11623966	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11627234	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11628293	1.00[CHB][hapmap]
rs11629144	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11846143	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17106069	1.00[CHB][hapmap]
rs17829281	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17834977	1.00[CHB][hapmap]
rs2145151	1.00[ASN][1000 genomes]
rs4420467	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4516148	1.00[CHB][hapmap]
rs4902623	0.96[YRI][hapmap]
rs61095830	1.00[ASN][1000 genomes]
rs7140546	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7143663	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs739874	1.00[CHB][hapmap]
rs8009398	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap]
rs999737	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69105000-69121600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:69108800-69119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
4	chr14:69112000-69121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:69113200-69121600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:69114000-69121200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:69115200-69119600	Enhancers	Placenta	Placenta
8	chr14:69115200-69123400	Enhancers	Colon Smooth Muscle	Colon
9	chr14:69115400-69119800	Enhancers	Fetal Lung	lung
10	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
11	chr14:69115600-69119600	Enhancers	NHLF	lung
12	chr14:69115800-69120800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:69115800-69121600	Weak transcription	Small Intestine	intestine
14	chr14:69116000-69119600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:69116000-69120800	Weak transcription	Fetal Thymus	thymus
16	chr14:69116000-69123600	Enhancers	Ovary	ovary
17	chr14:69116200-69119600	Enhancers	NHDF-Ad	bronchial
18	chr14:69116600-69121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:69116800-69119600	Enhancers	K562	blood
20	chr14:69116800-69119800	Enhancers	Fetal Heart	heart
21	chr14:69117000-69119400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr14:69117000-69119600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:69117000-69124000	Enhancers	Rectal Smooth Muscle	rectum
24	chr14:69117200-69119600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:69117200-69119800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:69117200-69119800	Enhancers	Fetal Muscle Leg	muscle
27	chr14:69117200-69120800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:69117400-69119000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:69117400-69119000	Enhancers	A549	lung
30	chr14:69117600-69119400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr14:69117600-69119400	Enhancers	Fetal Intestine Large	intestine
32	chr14:69117600-69121200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:69117800-69119400	Enhancers	Fetal Muscle Trunk	muscle
34	chr14:69117800-69119400	Enhancers	Right Ventricle	heart
35	chr14:69117800-69122400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr14:69118000-69118800	Enhancers	Gastric	stomach
37	chr14:69118000-69119000	Enhancers	Aorta	Aorta
38	chr14:69118000-69119000	Enhancers	HSMMtube	muscle
39	chr14:69118000-69119400	Enhancers	Left Ventricle	heart
40	chr14:69118000-69119400	Enhancers	Lung	lung
41	chr14:69118000-69119400	Enhancers	Pancreas	Pancrea
42	chr14:69118000-69119600	Enhancers	Primary hematopoietic stem cells	blood
43	chr14:69118000-69119600	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr14:69118200-69118800	Enhancers	Adipose Nuclei	Adipose
45	chr14:69118200-69118800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr14:69118200-69118800	Enhancers	HepG2	liver
47	chr14:69118200-69118800	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr14:69118200-69118800	Enhancers	NH-A	brain
49	chr14:69118200-69119000	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr14:69118200-69119200	Enhancers	HSMM	muscle

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