Variant report

Variant	rs739874
Chromosome Location	chr14:68974410-68974411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68957700..68966900-chr14:68968037..68976020,15	MCF-7	breast:
2	chr14:68932713..68936271-chr14:68973321..68975311,3	MCF-7	breast:
3	chr14:68934261..68937173-chr14:68974215..68976515,2	MCF-7	breast:
4	chr14:68973059..68975623-chr14:68975838..68977423,2	MCF-7	breast:
5	chr14:68973167..68978172-chr14:69258473..69260680,4	MCF-7	breast:
6	chr14:68974039..68976954-chr14:68979393..68981766,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap]
rs10149893	1.00[CHB][hapmap]
rs10483812	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs11621276	0.86[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11623966	1.00[CHB][hapmap]
rs11624097	0.91[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11624164	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11624333	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11627234	1.00[CHB][hapmap]
rs11628293	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11629144	1.00[CHB][hapmap]
rs12889251	0.86[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17106069	1.00[CHB][hapmap]
rs17755925	0.86[CEU][hapmap];0.88[AMR][1000 genomes]
rs17756000	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs17756147	1.00[ASN][1000 genomes]
rs17828907	0.85[AMR][1000 genomes]
rs17828955	0.82[CEU][hapmap];0.85[AMR][1000 genomes]
rs17829281	1.00[CHB][hapmap]
rs17834977	1.00[CHB][hapmap]
rs2158357	0.82[AMR][1000 genomes]
rs34636650	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs36028293	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4420467	1.00[CHB][hapmap]
rs4516148	1.00[CHB][hapmap]
rs7140546	1.00[CHB][hapmap]
rs71423314	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs71423316	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs71423317	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs71423318	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7143663	1.00[CHB][hapmap]
rs8009398	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap]
rs999737	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68965400-68976800	Enhancers	Fetal Thymus	thymus
2	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
3	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
5	chr14:68969800-68974800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:68971000-68983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:68971400-68975400	Enhancers	Thymus	Thymus
8	chr14:68971600-68975200	Enhancers	Primary B cells from cord blood	blood
9	chr14:68971800-68974600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:68971800-68975200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:68971800-68976200	Enhancers	Pancreas	Pancrea
12	chr14:68971800-68976800	Enhancers	Lung	lung
13	chr14:68971800-68981400	Enhancers	Fetal Muscle Trunk	muscle
14	chr14:68972000-68975400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:68972000-68975600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:68972000-68980200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:68972400-68974800	Enhancers	NHDF-Ad	bronchial
18	chr14:68972600-68974600	Enhancers	Brain Hippocampus Middle	brain
19	chr14:68972600-68974600	Enhancers	Esophagus	oesophagus
20	chr14:68972600-68974600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:68972600-68974600	Enhancers	HMEC	breast
22	chr14:68972600-68974800	Enhancers	Brain Angular Gyrus	brain
23	chr14:68972600-68975200	Enhancers	HSMMtube	muscle
24	chr14:68972600-68975400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr14:68972600-68982000	Enhancers	Fetal Intestine Small	intestine
26	chr14:68972800-68974600	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr14:68972800-68974800	Enhancers	Brain Cingulate Gyrus	brain
28	chr14:68972800-68975000	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr14:68972800-68975000	Enhancers	Brain Substantia Nigra	brain
30	chr14:68972800-68975000	Enhancers	Fetal Intestine Large	intestine
31	chr14:68972800-68975000	Enhancers	Small Intestine	intestine
32	chr14:68972800-68975600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr14:68973000-68974800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:68973000-68974800	Enhancers	Gastric	stomach
35	chr14:68973000-68975000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr14:68973000-68975400	Enhancers	Duodenum Mucosa	Duodenum
37	chr14:68973000-68975400	Enhancers	HepG2	liver
38	chr14:68973200-68974600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:68973200-68974600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr14:68973200-68974800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:68973200-68976400	Weak transcription	Osteobl	bone
42	chr14:68973400-68974800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr14:68973400-68974800	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr14:68973400-68975000	Weak transcription	Aorta	Aorta
45	chr14:68973400-68975000	Enhancers	Stomach Mucosa	stomach
46	chr14:68973400-68975200	Enhancers	Brain Anterior Caudate	brain
47	chr14:68973400-68975800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:68973400-68976000	Weak transcription	Right Atrium	heart
49	chr14:68973400-68976200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:68973400-68976400	Enhancers	Stomach Smooth Muscle	stomach

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