Variant report

Variant	rs36028293
Chromosome Location	chr14:68976059-68976060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68934261..68937173-chr14:68974215..68976515,2	MCF-7	breast:
2	chr14:68973059..68975623-chr14:68975838..68977423,2	MCF-7	breast:
3	chr14:68939074..68942142-chr14:68974708..68977098,3	MCF-7	breast:
4	chr14:68973167..68978172-chr14:69258473..69260680,4	MCF-7	breast:
5	chr14:68974039..68976954-chr14:68979393..68981766,3	MCF-7	breast:
6	chr14:68975208..68976075-chr14:69036359..69037291,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483812	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11621276	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624097	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624164	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624333	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844632	0.95[ASN][1000 genomes]
rs12889251	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105780	0.95[ASN][1000 genomes]
rs17105847	0.89[ASN][1000 genomes]
rs17755925	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756000	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17828907	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17828955	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158357	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34636650	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34882439	0.95[ASN][1000 genomes]
rs71423314	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71423316	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423317	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423318	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739874	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68965400-68976800	Enhancers	Fetal Thymus	thymus
2	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
3	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
5	chr14:68971000-68983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:68971800-68976200	Enhancers	Pancreas	Pancrea
7	chr14:68971800-68976800	Enhancers	Lung	lung
8	chr14:68971800-68981400	Enhancers	Fetal Muscle Trunk	muscle
9	chr14:68972000-68980200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:68972600-68982000	Enhancers	Fetal Intestine Small	intestine
11	chr14:68973200-68976400	Weak transcription	Osteobl	bone
12	chr14:68973400-68976200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:68973400-68976400	Enhancers	Stomach Smooth Muscle	stomach
14	chr14:68973400-68976600	Weak transcription	Brain Germinal Matrix	brain
15	chr14:68973400-68976800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:68973400-68977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:68973400-68979200	Weak transcription	Right Ventricle	heart
18	chr14:68973400-68981200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:68973400-68985000	Weak transcription	Colonic Mucosa	Colon
20	chr14:68973600-68976200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:68973600-68976200	Weak transcription	HSMM	muscle
22	chr14:68973600-68976400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:68973600-68976600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:68973600-68976600	Weak transcription	Left Ventricle	heart
25	chr14:68973600-68977600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr14:68973800-68976200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:68973800-68976200	Weak transcription	NH-A	brain
28	chr14:68973800-68976800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:68973800-68984600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:68974000-68976800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:68974200-68977000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:68974200-68977200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:68974200-68977400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr14:68974200-68979800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr14:68974400-68976400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:68974400-68977000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:68974400-68977000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:68974600-68976200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:68974600-68976400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr14:68974600-68976600	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:68974800-68976200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:68974800-68976400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr14:68974800-68977200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:68974800-68984600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr14:68974800-68984800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr14:68975000-68976600	Weak transcription	Stomach Mucosa	stomach
47	chr14:68975000-68979200	Weak transcription	Small Intestine	intestine
48	chr14:68975200-68978400	Weak transcription	Primary B cells from cord blood	blood
49	chr14:68975200-68978600	Weak transcription	GM12878-XiMat	blood
50	chr14:68975200-68980000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links