Variant report

Variant	rs11624164
Chromosome Location	chr14:68986157-68986158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68971123..68974039-chr14:68984609..68986451,2	MCF-7	breast:
2	chr14:68985509..68988121-chr14:69256458..69258080,2	MCF-7	breast:
3	chr14:68984645..68986314-chr14:69279663..69281210,2	MCF-7	breast:
4	chr14:68968310..68970702-chr14:68984207..68986493,2	MCF-7	breast:
5	chr14:68720614..68722595-chr14:68984911..68987836,2	MCF-7	breast:
6	chr14:68938741..68940567-chr14:68984751..68988855,3	MCF-7	breast:
7	chr14:68984084..68986661-chr14:69258955..69262203,4	MCF-7	breast:
8	chr14:68960140..68963220-chr14:68983834..68986769,3	MCF-7	breast:
9	chr14:68933643..68938139-chr14:68984805..68987652,4	MCF-7	breast:
10	chr14:68985786..68987686-chr14:69260916..69262958,2	MCF-7	breast:
11	chr14:68763749..68766581-chr14:68985695..68988216,2	MCF-7	breast:
12	chr14:68986084..68990937-chr14:69249749..69255560,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10483812	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10483813	0.80[CEU][hapmap]
rs11621276	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624333	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628293	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs11844632	0.95[ASN][1000 genomes]
rs12889251	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105780	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17105847	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17755734	1.00[MKK][hapmap]
rs17755752	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs17755925	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756000	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17828907	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17828955	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158357	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34636650	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34882439	0.95[ASN][1000 genomes]
rs36028293	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423314	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71423316	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423317	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423318	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739874	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs999737	0.80[CEU][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11624164	ZFP36L1	cis	cerebellum	SCAN

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
2	chr14:68977600-68988400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:68983000-68987000	Enhancers	Adipose Nuclei	Adipose
4	chr14:68983600-68986200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:68983600-68986400	Enhancers	Ovary	ovary
6	chr14:68983600-68991200	Enhancers	NHEK	skin
7	chr14:68983800-68986400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:68983800-68986400	Enhancers	Right Atrium	heart
9	chr14:68983800-68987400	Enhancers	Fetal Kidney	kidney
10	chr14:68983800-68991600	Enhancers	Fetal Muscle Leg	muscle
11	chr14:68983800-68991800	Enhancers	Fetal Stomach	stomach
12	chr14:68984000-68986400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:68984000-68986600	Enhancers	Fetal Thymus	thymus
14	chr14:68984000-68987400	Enhancers	Primary T cells from cord blood	blood
15	chr14:68984200-68986800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr14:68984200-68987000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr14:68984200-68990200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:68984200-68991200	Enhancers	Fetal Heart	heart
19	chr14:68984200-68991800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:68984400-68987000	Enhancers	Pancreas	Pancrea
21	chr14:68984600-68986200	Enhancers	Fetal Muscle Trunk	muscle
22	chr14:68984600-68986400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr14:68984600-68986400	Enhancers	Brain Substantia Nigra	brain
24	chr14:68984600-68986400	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr14:68984600-68986400	Enhancers	Left Ventricle	heart
26	chr14:68984600-68986400	Enhancers	Psoas Muscle	Psoas
27	chr14:68984600-68986400	Enhancers	Small Intestine	intestine
28	chr14:68984600-68986600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr14:68984600-68987000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:68984600-68989600	Enhancers	Stomach Mucosa	stomach
31	chr14:68984600-68989800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr14:68984600-68990200	Enhancers	Primary B cells from peripheral blood	blood
33	chr14:68984600-68990200	Enhancers	Fetal Intestine Large	intestine
34	chr14:68984600-68990600	Enhancers	Fetal Intestine Small	intestine
35	chr14:68984600-68991400	Enhancers	Placenta Amnion	Placenta Amnion
36	chr14:68984600-68991600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:68984600-68991800	Enhancers	Placenta	Placenta
38	chr14:68984800-68986200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:68984800-68986400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:68984800-68986400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:68984800-68986400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr14:68984800-68986400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:68984800-68986400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr14:68984800-68986400	Enhancers	Brain Anterior Caudate	brain
45	chr14:68984800-68986400	Enhancers	Brain Cingulate Gyrus	brain
46	chr14:68984800-68986400	Enhancers	Lung	lung
47	chr14:68984800-68987200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr14:68984800-68989600	Enhancers	HMEC	breast
49	chr14:68984800-68989800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:68985000-68986200	Enhancers	Brain Hippocampus Middle	brain

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