Variant report

Variant	rs17834977
Chromosome Location	chr14:69078074-69078075
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69076773..69079330-chr14:69081666..69084664,2	K562	blood:
2	chr14:69073750..69075278-chr14:69076266..69078869,2	K562	blood:
3	chr14:68863006..68865932-chr14:69077018..69079780,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10143428	1.00[CHB][hapmap]
rs10149893	1.00[CHB][hapmap]
rs10438159	0.87[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs11623966	1.00[CHB][hapmap]
rs11627234	1.00[CHB][hapmap]
rs11628293	1.00[CHB][hapmap]
rs11629144	1.00[CHB][hapmap]
rs11847037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848320	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11850918	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106069	1.00[CHB][hapmap]
rs17756651	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs17829281	1.00[CHB][hapmap]
rs17835116	1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17835200	1.00[MEX][hapmap];0.88[TSI][hapmap]
rs1884809	1.00[ASN][1000 genomes]
rs2145156	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs4420467	1.00[CHB][hapmap]
rs4516148	1.00[CHB][hapmap]
rs59884829	1.00[ASN][1000 genomes]
rs61987106	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7140546	1.00[CHB][hapmap]
rs7143663	1.00[CHB][hapmap]
rs739874	1.00[CHB][hapmap]
rs8009398	1.00[CHB][hapmap]
rs8009601	1.00[CHB][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999737	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69069600-69080000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69072400-69079400	Enhancers	Fetal Intestine Large	intestine
3	chr14:69072400-69079800	Enhancers	Fetal Stomach	stomach
4	chr14:69072600-69079400	Enhancers	Placenta	Placenta
5	chr14:69072800-69079200	Enhancers	Fetal Thymus	thymus
6	chr14:69072800-69079400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr14:69073400-69079800	Enhancers	Stomach Mucosa	stomach
8	chr14:69074400-69078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:69074400-69078400	Weak transcription	NHDF-Ad	bronchial
10	chr14:69074400-69078800	Enhancers	Primary T cells from cord blood	blood
11	chr14:69074400-69078800	Weak transcription	Liver	Liver
12	chr14:69074600-69078400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:69074600-69078800	Weak transcription	Osteobl	bone
14	chr14:69075000-69078400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:69075200-69081200	Weak transcription	Fetal Brain Male	brain
16	chr14:69075400-69078200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr14:69075400-69078400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:69075400-69078400	Weak transcription	Brain Anterior Caudate	brain
19	chr14:69075400-69078400	Weak transcription	Esophagus	oesophagus
20	chr14:69075600-69078200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr14:69075600-69078400	Weak transcription	Colonic Mucosa	Colon
22	chr14:69075600-69078400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:69075600-69078800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:69075600-69080600	Weak transcription	Thymus	Thymus
25	chr14:69075800-69079000	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:69076000-69078600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:69076000-69080600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:69076200-69078200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr14:69076200-69079400	Enhancers	Pancreas	Pancrea
30	chr14:69076800-69078400	Enhancers	HSMMtube	muscle
31	chr14:69076800-69079800	Enhancers	Fetal Intestine Small	intestine
32	chr14:69077000-69078800	Enhancers	Colon Smooth Muscle	Colon
33	chr14:69077000-69079800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr14:69077000-69079800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr14:69077200-69078400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr14:69077200-69079200	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr14:69077200-69079400	Enhancers	Fetal Kidney	kidney
38	chr14:69077200-69079800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr14:69077200-69079800	Enhancers	Gastric	stomach
40	chr14:69077200-69080000	Enhancers	Left Ventricle	heart
41	chr14:69077400-69078400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr14:69077400-69078800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:69077400-69079800	Enhancers	HSMM	muscle
44	chr14:69077600-69079200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:69077800-69078200	Weak transcription	HepG2	liver
46	chr14:69077800-69079000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:69077800-69079000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr14:69077800-69079200	Enhancers	Stomach Smooth Muscle	stomach
49	chr14:69077800-69079400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:69077800-69079400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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