Variant report

Variant	rs59884829
Chromosome Location	chr14:69275399-69275400
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69134802..69136420-chr14:69275225..69277429,2	MCF-7	breast:
2	chr14:68405658..68408648-chr14:69273942..69276628,2	MCF-7	breast:
3	chr14:69270505..69278428-chr14:69279681..69285729,13	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11847037	1.00[ASN][1000 genomes]
rs11850918	1.00[ASN][1000 genomes]
rs17834977	1.00[ASN][1000 genomes]
rs1884809	1.00[ASN][1000 genomes]
rs8009601	1.00[ASN][1000 genomes]
rs8017092	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69264200-69277800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:69264400-69281200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:69271400-69277000	Enhancers	Colon Smooth Muscle	Colon
4	chr14:69271600-69281200	Enhancers	Fetal Muscle Leg	muscle
5	chr14:69271600-69281200	Enhancers	Fetal Stomach	stomach
6	chr14:69271800-69275600	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr14:69271800-69277200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:69272200-69275400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr14:69272200-69275800	Enhancers	Stomach Mucosa	stomach
10	chr14:69272200-69277000	Enhancers	Placenta	Placenta
11	chr14:69272400-69276600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:69272400-69278600	Enhancers	Fetal Muscle Trunk	muscle
13	chr14:69272400-69279200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr14:69272800-69275400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr14:69272800-69276800	Enhancers	Primary B cells from cord blood	blood
16	chr14:69272800-69277200	Enhancers	Fetal Intestine Large	intestine
17	chr14:69272800-69277200	Enhancers	Pancreas	Pancrea
18	chr14:69273000-69276600	Enhancers	Ovary	ovary
19	chr14:69273200-69275400	Enhancers	Liver	Liver
20	chr14:69273200-69275600	Enhancers	Colonic Mucosa	Colon
21	chr14:69273200-69275800	Enhancers	Esophagus	oesophagus
22	chr14:69273200-69275800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:69273200-69276400	Enhancers	Adipose Nuclei	Adipose
24	chr14:69273200-69276400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr14:69273200-69276600	Enhancers	Spleen	Spleen
26	chr14:69273200-69276800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:69273200-69277200	Enhancers	Lung	lung
28	chr14:69273400-69275800	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr14:69273800-69275600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr14:69274000-69275400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:69274000-69277000	Enhancers	Rectal Smooth Muscle	rectum
32	chr14:69274000-69278400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr14:69274000-69278400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:69274000-69278800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:69274000-69281000	Weak transcription	Aorta	Aorta
36	chr14:69274000-69281000	Weak transcription	Fetal Brain Male	brain
37	chr14:69274200-69275800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:69274200-69276400	Weak transcription	Right Ventricle	heart
39	chr14:69274200-69278800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:69274200-69279000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:69274200-69279200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:69274200-69279400	Weak transcription	GM12878-XiMat	blood
43	chr14:69274200-69279600	Weak transcription	Thymus	Thymus
44	chr14:69274200-69280000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:69274200-69280000	Weak transcription	Brain Substantia Nigra	brain
46	chr14:69274200-69280000	Weak transcription	Psoas Muscle	Psoas
47	chr14:69274200-69280800	Enhancers	Primary B cells from peripheral blood	blood
48	chr14:69274200-69281000	Weak transcription	Brain Angular Gyrus	brain
49	chr14:69274400-69275400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr14:69274400-69275400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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