Variant report

Variant	rs17835116
Chromosome Location	chr14:69117178-69117179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69116897..69119206-chr14:69123496..69125960,2	MCF-7	breast:
2	chr14:69113122..69115915-chr14:69116555..69118938,2	K562	blood:
3	chr14:69115935..69118979-chr14:69121407..69123459,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10438159	0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs11847037	0.81[AMR][1000 genomes]
rs11848320	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11850918	0.93[AMR][1000 genomes]
rs17756651	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17834977	1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17835200	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2145156	0.81[EUR][1000 genomes]
rs55779318	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55877285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56070472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59978441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61987106	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61987107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987122	0.98[EUR][1000 genomes]
rs8009601	0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs8017092	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69105000-69121600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:69106400-69118200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:69106400-69118400	Weak transcription	Spleen	Spleen
4	chr14:69108800-69119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
6	chr14:69111200-69117200	Weak transcription	Right Ventricle	heart
7	chr14:69111200-69117800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:69111400-69117200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:69112000-69121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:69112400-69118200	Weak transcription	NH-A	brain
11	chr14:69113200-69121600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:69113400-69117200	Weak transcription	Fetal Intestine Small	intestine
13	chr14:69113400-69118200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:69113400-69118200	Weak transcription	HepG2	liver
15	chr14:69113400-69118200	Weak transcription	HSMM	muscle
16	chr14:69113800-69118600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:69114000-69121200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr14:69115200-69119600	Enhancers	Placenta	Placenta
19	chr14:69115200-69123400	Enhancers	Colon Smooth Muscle	Colon
20	chr14:69115400-69118000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:69115400-69119800	Enhancers	Fetal Lung	lung
22	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
23	chr14:69115600-69117200	Enhancers	Osteobl	bone
24	chr14:69115600-69118400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:69115600-69118400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:69115600-69119600	Enhancers	NHLF	lung
27	chr14:69115800-69118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:69115800-69118200	Weak transcription	Adipose Nuclei	Adipose
29	chr14:69115800-69120800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:69115800-69121600	Weak transcription	Small Intestine	intestine
31	chr14:69116000-69117200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:69116000-69119600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:69116000-69120800	Weak transcription	Fetal Thymus	thymus
34	chr14:69116000-69123600	Enhancers	Ovary	ovary
35	chr14:69116200-69118400	Weak transcription	Psoas Muscle	Psoas
36	chr14:69116200-69119600	Enhancers	NHDF-Ad	bronchial
37	chr14:69116600-69117200	Weak transcription	Fetal Muscle Leg	muscle
38	chr14:69116600-69118600	Enhancers	Liver	Liver
39	chr14:69116600-69121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:69116800-69118200	Weak transcription	Esophagus	oesophagus
41	chr14:69116800-69119600	Enhancers	K562	blood
42	chr14:69116800-69119800	Enhancers	Fetal Heart	heart
43	chr14:69117000-69117200	Enhancers	Brain Cingulate Gyrus	brain
44	chr14:69117000-69117200	Enhancers	Fetal Intestine Large	intestine
45	chr14:69117000-69117200	Enhancers	Right Atrium	heart
46	chr14:69117000-69117400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr14:69117000-69117800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:69117000-69118400	Enhancers	Primary T cells from cord blood	blood
49	chr14:69117000-69118600	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr14:69117000-69119400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links