Variant report

Variant	rs61987122
Chromosome Location	chr14:69123770-69123771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68937048..68939834-chr14:69120983..69124190,3	MCF-7	breast:
2	chr14:69120949..69124420-chr14:69255481..69258792,4	MCF-7	breast:
3	chr14:69117709..69119470-chr14:69122795..69124704,2	K562	blood:
4	chr14:69122320..69125331-chr14:69259876..69262362,3	MCF-7	breast:
5	chr14:69112688..69114597-chr14:69122344..69125074,2	K562	blood:
6	chr14:69030473..69032904-chr14:69122357..69124258,2	MCF-7	breast:
7	chr14:68740932..68744536-chr14:69121884..69124192,3	MCF-7	breast:
8	chr14:69116897..69119206-chr14:69123496..69125960,2	MCF-7	breast:
9	chr14:69122826..69132436-chr14:69256721..69264610,21	MCF-7	breast:
10	chr14:69122387..69124084-chr14:69250804..69252456,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11848320	0.87[EUR][1000 genomes]
rs17835116	0.98[EUR][1000 genomes]
rs17835200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55779318	0.98[EUR][1000 genomes]
rs55877285	0.98[EUR][1000 genomes]
rs56070472	0.98[EUR][1000 genomes]
rs59978441	0.96[EUR][1000 genomes]
rs61987106	0.87[EUR][1000 genomes]
rs61987107	0.98[EUR][1000 genomes]
rs61987114	0.98[EUR][1000 genomes]
rs61987120	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
2	chr14:69117000-69124000	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:69119000-69125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:69119600-69125400	Weak transcription	NHDF-Ad	bronchial
5	chr14:69120800-69123800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:69120800-69126800	Enhancers	Fetal Lung	lung
7	chr14:69120800-69127000	Enhancers	Fetal Thymus	thymus
8	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
9	chr14:69121000-69123800	Enhancers	Brain Substantia Nigra	brain
10	chr14:69121000-69125800	Enhancers	Fetal Muscle Trunk	muscle
11	chr14:69121200-69123800	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:69121200-69129400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr14:69121600-69124000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr14:69122000-69125000	Weak transcription	Gastric	stomach
15	chr14:69122000-69125800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:69122000-69127400	Weak transcription	GM12878-XiMat	blood
17	chr14:69122000-69136000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:69122200-69131200	Weak transcription	Small Intestine	intestine
19	chr14:69122400-69123800	Enhancers	Primary T cells from cord blood	blood
20	chr14:69122400-69125400	Weak transcription	NHLF	lung
21	chr14:69122600-69125400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr14:69122600-69125600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:69122600-69125600	Weak transcription	Colonic Mucosa	Colon
24	chr14:69122600-69129600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr14:69122800-69125000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:69122800-69125200	Enhancers	Stomach Smooth Muscle	stomach
27	chr14:69122800-69125200	Weak transcription	HSMMtube	muscle
28	chr14:69122800-69125600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:69122800-69125600	Weak transcription	Left Ventricle	heart
30	chr14:69122800-69125600	Weak transcription	Stomach Mucosa	stomach
31	chr14:69122800-69125600	Weak transcription	HSMM	muscle
32	chr14:69122800-69128400	Weak transcription	Right Ventricle	heart
33	chr14:69122800-69133600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr14:69122800-69133800	Weak transcription	Primary B cells from cord blood	blood
35	chr14:69123000-69124400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:69123000-69124600	Weak transcription	Lung	lung
37	chr14:69123000-69124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:69123000-69124800	Weak transcription	Brain Germinal Matrix	brain
39	chr14:69123000-69125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:69123000-69125000	Weak transcription	Brain Angular Gyrus	brain
41	chr14:69123000-69125000	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:69123000-69125000	Weak transcription	Esophagus	oesophagus
43	chr14:69123000-69125000	Weak transcription	Pancreas	Pancrea
44	chr14:69123000-69125200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:69123000-69125200	Weak transcription	Brain Anterior Caudate	brain
46	chr14:69123000-69125200	Weak transcription	Fetal Heart	heart
47	chr14:69123000-69125200	Weak transcription	Fetal Kidney	kidney
48	chr14:69123000-69125200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:69123000-69125200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr14:69123000-69125400	Weak transcription	NH-A	brain

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