Variant report

Variant	rs72729562
Chromosome Location	chr14:69095474-69095475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr14:69095010-69095713	H1-hESC	embryonic stem cell:	n/a	chr14:69095552-69095562 chr14:69095383-69095394
2	TAF1	chr14:69094882-69096042	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr14:69094883-69096211	MCF-7	breast:	n/a	chr14:69095552-69095562 chr14:69095383-69095394
4	MAX	chr14:69095437-69095906	H1-hESC	embryonic stem cell:	n/a	chr14:69095552-69095562
5	GATA3	chr14:69095089-69096198	MCF-7	breast:	n/a	chr14:69095338-69095347
6	TAF1	chr14:69094975-69095500	H1-hESC	embryonic stem cell:	n/a	n/a
7	GATA3	chr14:69095452-69095825	MCF-7	breast:	n/a	n/a
8	GATA3	chr14:69094900-69096222	MCF-7	breast:	n/a	chr14:69095338-69095347
9	YY1	chr14:69095382-69096148	H1-hESC	embryonic stem cell:	n/a	chr14:69095558-69095572
10	HDAC2	chr14:69095405-69096166	MCF-7	breast:	n/a	chr14:69095439-69095453
11	GATA3	chr14:69095227-69096142	T-47D	breast:	n/a	chr14:69095338-69095347
12	CEBPB	chr14:69095008-69096151	MCF-7	breast:	n/a	chr14:69096058-69096069
13	POLR2A	chr14:69094764-69096219	H1-hESC	embryonic stem cell:	n/a	n/a
14	GATA3	chr14:69094959-69096109	T-47D	breast:	n/a	chr14:69095338-69095347
15	MAX	chr14:69094913-69095980	H1-hESC	embryonic stem cell:	n/a	chr14:69095552-69095562 chr14:69095383-69095394
16	POLR2A	chr14:69094941-69095564	H1-hESC	embryonic stem cell:	n/a	n/a
17	FOXA1	chr14:69095203-69096136	T-47D	breast:	n/a	n/a
18	E2F6	chr14:69095421-69096021	H1-hESC	embryonic stem cell:	n/a	n/a
19	SP4	chr14:69095401-69095783	H1-hESC	embryonic stem cell:	n/a	n/a
20	NR2F2	chr14:69094903-69096159	MCF-7	breast:	n/a	n/a
21	MAX	chr14:69094817-69095932	H1-hESC	embryonic stem cell:	n/a	chr14:69095552-69095562 chr14:69095383-69095394
22	RAD21	chr14:69095234-69096264	MCF-7	breast:	n/a	chr14:69095710-69095722
23	ESR1	chr14:69095372-69096036	T-47D	breast:	n/a	n/a
24	FOXA1	chr14:69095210-69096163	T-47D	breast:	n/a	n/a
25	EP300	chr14:69095031-69096106	T-47D	breast:	n/a	chr14:69095157-69095173 chr14:69095170-69095186
26	HDAC2	chr14:69094790-69096237	MCF-7	breast:	n/a	chr14:69095439-69095453 chr14:69095112-69095121
27	EP300	chr14:69095284-69096157	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:69095355..69099854-chr14:69250960..69255583,6	MCF-7	breast:
2	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
3	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
4	chr14:69094921..69095555-chr5:137673535..137674260,2	HCT-116	colon:
5	chr14:69094450..69096526-chr21:43784501..43786843,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	TF binding region
ENSG00000185650	Chromatin interaction
ENSG00000120709	Chromatin interaction
ENSG00000160182	Chromatin interaction
ENSG00000158402	Chromatin interaction

rs_ID	r²[population]
rs10131921	0.90[ASN][1000 genomes]
rs10143415	0.91[ASN][1000 genomes]
rs17106015	1.00[ASN][1000 genomes]
rs17106039	0.91[ASN][1000 genomes]
rs17106049	0.91[ASN][1000 genomes]
rs2331779	0.91[ASN][1000 genomes]
rs2877493	0.91[ASN][1000 genomes]
rs61224239	0.83[ASN][1000 genomes]
rs61987066	0.83[ASN][1000 genomes]
rs61987069	0.91[ASN][1000 genomes]
rs61987070	0.91[ASN][1000 genomes]
rs61987071	0.91[ASN][1000 genomes]
rs61987100	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987103	1.00[AFR][1000 genomes]
rs61987105	1.00[AFR][1000 genomes]
rs8007479	0.91[ASN][1000 genomes]
rs8009151	0.91[ASN][1000 genomes]
rs8009865	0.83[ASN][1000 genomes]
rs8011917	0.91[ASN][1000 genomes]
rs8014901	0.91[ASN][1000 genomes]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:69087000-69098400	Weak transcription	NHLF	lung
3	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
5	chr14:69092400-69101400	Enhancers	Right Atrium	heart
6	chr14:69092600-69096400	Enhancers	Fetal Heart	heart
7	chr14:69092800-69098800	Enhancers	HepG2	liver
8	chr14:69093000-69104400	Enhancers	Fetal Lung	lung
9	chr14:69093400-69099400	Weak transcription	Lung	lung
10	chr14:69093400-69099400	Weak transcription	Psoas Muscle	Psoas
11	chr14:69093400-69099800	Weak transcription	NHDF-Ad	bronchial
12	chr14:69093600-69096000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:69093600-69097200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:69094200-69095800	Enhancers	Fetal Brain Male	brain
15	chr14:69094200-69096000	Enhancers	Fetal Muscle Trunk	muscle
16	chr14:69094200-69096800	Enhancers	Adipose Nuclei	Adipose
17	chr14:69094200-69099800	Weak transcription	HSMMtube	muscle
18	chr14:69094400-69095600	Weak transcription	K562	blood
19	chr14:69094400-69096200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:69094400-69096800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:69094400-69096800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr14:69094400-69097000	Weak transcription	Right Ventricle	heart
23	chr14:69094400-69098200	Weak transcription	Ovary	ovary
24	chr14:69094400-69098200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:69094400-69098400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:69094400-69099800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:69094600-69095600	Active TSS	Rectal Smooth Muscle	rectum
28	chr14:69094600-69095800	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr14:69094600-69097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:69094600-69097800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:69094800-69095600	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr14:69094800-69095600	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr14:69094800-69095600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:69094800-69095600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:69094800-69095600	Flanking Active TSS	Fetal Stomach	stomach
36	chr14:69094800-69095800	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr14:69094800-69095800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr14:69094800-69095800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr14:69094800-69095800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:69094800-69095800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:69094800-69095800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:69094800-69095800	Flanking Active TSS	Placenta	Placenta
43	chr14:69094800-69095800	Flanking Active TSS	Fetal Thymus	thymus
44	chr14:69094800-69095800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
45	chr14:69094800-69096000	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
46	chr14:69094800-69096000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr14:69094800-69096000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:69094800-69096000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:69094800-69096000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr14:69094800-69096000	Active TSS	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links