Variant report

Variant	rs28488389
Chromosome Location	chr14:77824795-77824796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77823236..77824802-chr14:77924550..77926224,2	K562	blood:
2	chr14:77823843..77825377-chr14:77826472..77828918,2	MCF-7	breast:
3	chr14:77815833..77817501-chr14:77823465..77825463,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10130726	1.00[AFR][1000 genomes]
rs56067603	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:77806400-77838600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:77808400-77830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:77809600-77825000	Weak transcription	Gastric	stomach
5	chr14:77809600-77842000	Weak transcription	HUVEC	blood vessel
6	chr14:77810000-77838800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:77810600-77825400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:77811200-77830000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:77811200-77835000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:77812800-77842000	Weak transcription	Pancreas	Pancrea
11	chr14:77813000-77827000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:77813000-77835600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:77813800-77842400	Weak transcription	Aorta	Aorta
14	chr14:77816800-77835600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:77817000-77826000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:77817000-77842000	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:77817200-77825200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr14:77817200-77826600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:77817200-77827000	Weak transcription	GM12878-XiMat	blood
20	chr14:77817200-77840000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr14:77817200-77841600	Weak transcription	Brain Germinal Matrix	brain
22	chr14:77817200-77842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:77817400-77830400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr14:77817400-77830600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr14:77817400-77835200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:77817400-77835400	Weak transcription	Primary T cells from cord blood	blood
27	chr14:77817400-77841200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr14:77817600-77835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:77817800-77837600	Weak transcription	Fetal Intestine Small	intestine
30	chr14:77818000-77842000	Weak transcription	Fetal Stomach	stomach
31	chr14:77818200-77826800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr14:77818200-77831800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:77818200-77835400	Weak transcription	Dnd41	blood
34	chr14:77820600-77828200	Weak transcription	Brain Angular Gyrus	brain
35	chr14:77822200-77828200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:77822400-77841600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:77823400-77825800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:77823600-77829200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:77824200-77835800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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