Variant report

Variant	rs28489122
Chromosome Location	chr8:59545354-59545355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59544532..59547117-chr8:59548377..59551376,3	K562	blood:
2	chr8:59528229..59531083-chr8:59543885..59546434,2	K562	blood:
3	chr8:59543664..59545939-chr8:59554481..59557074,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10087843	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10088541	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10090212	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10090837	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10091952	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10112330	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10113323	0.98[ASN][1000 genomes]
rs10113830	0.99[ASN][1000 genomes]
rs10957063	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11774998	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11985566	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11994921	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12171670	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1352496	0.98[ASN][1000 genomes]
rs1387222	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16923637	0.85[ASN][1000 genomes]
rs17206746	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17272151	0.87[ASN][1000 genomes]
rs2130072	0.88[ASN][1000 genomes]
rs2326129	0.86[EUR][1000 genomes]
rs28429099	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28755983	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28886919	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4266636	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4598239	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60567264	0.87[ASN][1000 genomes]
rs6471732	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6998210	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7006937	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7011066	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72647451	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7825739	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7833791	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59467400-59559400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:59498600-59548400	Weak transcription	Stomach Mucosa	stomach
3	chr8:59503000-59545400	Weak transcription	Esophagus	oesophagus
4	chr8:59507400-59561200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:59507600-59545400	Weak transcription	Gastric	stomach
6	chr8:59508000-59545400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:59509000-59560400	Weak transcription	Brain Substantia Nigra	brain
8	chr8:59510200-59554800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:59510400-59551000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:59510400-59570200	Weak transcription	Colonic Mucosa	Colon
11	chr8:59513000-59561200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr8:59520600-59554600	Weak transcription	HMEC	breast
13	chr8:59522000-59570200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr8:59524200-59554400	Weak transcription	NHEK	skin
15	chr8:59529400-59554600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:59532000-59545600	Weak transcription	NHDF-Ad	bronchial
17	chr8:59533800-59553000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:59535800-59546800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:59535800-59552400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:59535800-59561000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:59535800-59561000	Weak transcription	Small Intestine	intestine
22	chr8:59536200-59564000	Weak transcription	Fetal Brain Male	brain
23	chr8:59539600-59550800	Weak transcription	A549	lung
24	chr8:59540600-59555600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:59541200-59553000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:59541400-59554600	Strong transcription	Fetal Thymus	thymus
27	chr8:59541400-59555200	Strong transcription	Dnd41	blood
28	chr8:59541600-59546800	Strong transcription	Fetal Intestine Large	intestine
29	chr8:59541600-59547400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:59541600-59547600	Strong transcription	Primary T cells from cord blood	blood
31	chr8:59541600-59559400	Weak transcription	HepG2	liver
32	chr8:59541800-59552400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr8:59542000-59551800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr8:59542000-59553400	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr8:59542200-59546400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr8:59542200-59547600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr8:59542200-59548200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr8:59542400-59547400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:59542400-59555400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:59542600-59546200	Strong transcription	Fetal Muscle Leg	muscle
41	chr8:59542600-59547600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:59542600-59554200	Weak transcription	NHLF	lung
43	chr8:59542800-59554400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr8:59542800-59560800	Weak transcription	Fetal Brain Female	brain
45	chr8:59543000-59545400	Weak transcription	Brain Anterior Caudate	brain
46	chr8:59543000-59545400	Weak transcription	HUVEC	blood vessel
47	chr8:59543000-59550600	Weak transcription	Fetal Heart	heart
48	chr8:59543000-59555800	Weak transcription	Psoas Muscle	Psoas
49	chr8:59543200-59546000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:59543200-59548200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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