Variant report

Variant	rs28886919
Chromosome Location	chr8:59534060-59534061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10087843	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10088541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10090212	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10090837	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091952	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10112330	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10113323	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10113830	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10957063	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11774998	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11985566	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11994921	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12171670	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1352496	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1387222	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16923637	0.84[ASN][1000 genomes]
rs17206746	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17272151	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2130072	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2326129	0.88[EUR][1000 genomes]
rs28429099	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28489122	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28755983	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4266636	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4598239	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60567264	0.86[ASN][1000 genomes]
rs6471732	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6998210	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7006937	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7011066	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72647451	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7825739	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7833791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890939	chr8:59471187-59544413	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1031537	chr8:59482949-59536971	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59467400-59559400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:59498600-59548400	Weak transcription	Stomach Mucosa	stomach
3	chr8:59503000-59545400	Weak transcription	Esophagus	oesophagus
4	chr8:59507400-59561200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:59507600-59545400	Weak transcription	Gastric	stomach
6	chr8:59508000-59538800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:59508000-59545400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:59508200-59542200	Weak transcription	Aorta	Aorta
9	chr8:59508200-59542400	Weak transcription	Psoas Muscle	Psoas
10	chr8:59509000-59542200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:59509000-59543000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:59509000-59560400	Weak transcription	Brain Substantia Nigra	brain
13	chr8:59509800-59542400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:59510200-59542400	Weak transcription	Lung	lung
15	chr8:59510200-59554800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr8:59510400-59551000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:59510400-59570200	Weak transcription	Colonic Mucosa	Colon
18	chr8:59512000-59542200	Weak transcription	Right Ventricle	heart
19	chr8:59512200-59542200	Weak transcription	NH-A	brain
20	chr8:59512400-59540400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:59512800-59534600	Weak transcription	Placenta	Placenta
22	chr8:59513000-59541600	Weak transcription	Brain Germinal Matrix	brain
23	chr8:59513000-59542000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:59513000-59561200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr8:59516000-59535400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:59520200-59535200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:59520200-59542200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr8:59520400-59534600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr8:59520600-59535400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr8:59520600-59541600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:59520600-59554600	Weak transcription	HMEC	breast
32	chr8:59520800-59535400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr8:59521000-59542800	Weak transcription	Hela-S3	cervix
34	chr8:59521800-59535400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr8:59521800-59542200	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:59521800-59542400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:59521800-59542400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:59522000-59570200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:59522200-59535400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr8:59522200-59537400	Weak transcription	A549	lung
41	chr8:59522200-59538800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr8:59522200-59541400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr8:59522200-59542400	Weak transcription	HUVEC	blood vessel
44	chr8:59522200-59542800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:59522200-59545200	Weak transcription	Spleen	Spleen
46	chr8:59522400-59534800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:59522400-59535400	Weak transcription	K562	blood
48	chr8:59522400-59537200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr8:59522400-59541800	Weak transcription	NHLF	lung
50	chr8:59523600-59534800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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