The 2.0 version of rSNPBase

Variant report

Variant rs28493279
Chromosome Location chr15:55506649-55506650
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:55489600-55513200 Weak transcription Lung lung
2 chr15:55489800-55540200 Weak transcription Esophagus oesophagus
3 chr15:55490000-55509600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr15:55490000-55510000 Weak transcription NHLF lung
5 chr15:55490000-55513000 Weak transcription Fetal Intestine Large intestine
6 chr15:55490000-55513200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr15:55490000-55513200 Weak transcription Placenta Amnion Placenta Amnion
8 chr15:55490000-55513200 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr15:55490000-55517200 Weak transcription Aorta Aorta
10 chr15:55490000-55529400 Weak transcription Rectal Smooth Muscle rectum
11 chr15:55490000-55562800 Weak transcription Ovary ovary
12 chr15:55490200-55510000 Weak transcription Fetal Kidney kidney
13 chr15:55490200-55510200 Weak transcription Fetal Lung lung
14 chr15:55490200-55511400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr15:55490200-55511400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr15:55490200-55511400 Weak transcription Osteobl bone
17 chr15:55490200-55513200 Weak transcription Duodenum Mucosa Duodenum
18 chr15:55490200-55513800 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr15:55490200-55514000 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr15:55490400-55510000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr15:55490400-55512600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr15:55490600-55510200 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr15:55491000-55513600 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr15:55497800-55510000 Weak transcription Primary B cells from cord blood blood
25 chr15:55497800-55511200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr15:55497800-55513000 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr15:55497800-55513000 Weak transcription Hela-S3 cervix
28 chr15:55497800-55514000 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr15:55497800-55518400 Weak transcription Gastric stomach
30 chr15:55498000-55509400 Weak transcription Stomach Mucosa stomach
31 chr15:55498000-55509600 Weak transcription Primary B cells from peripheral blood blood
32 chr15:55498000-55509600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr15:55498000-55510000 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr15:55498000-55510000 Weak transcription Liver Liver
35 chr15:55498000-55510200 Weak transcription Primary hematopoietic stem cells blood
36 chr15:55498000-55510200 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr15:55498000-55510400 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr15:55498000-55512800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr15:55498000-55512800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr15:55498000-55513200 Weak transcription Primary T cells from cord blood blood
41 chr15:55498000-55513400 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr15:55498000-55514200 Weak transcription Stomach Smooth Muscle stomach
43 chr15:55498200-55509600 Weak transcription Primary T cells fromperipheralblood blood
44 chr15:55498400-55512400 Weak transcription Fetal Stomach stomach
45 chr15:55499800-55510200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr15:55501200-55508000 Weak transcription K562 blood
47 chr15:55502800-55509000 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr15:55504200-55509000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr15:55504200-55509600 Strong transcription Monocytes-CD14+_RO01746 blood
50 chr15:55505200-55507200 Strong transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015