Variant report

Variant	rs28495834
Chromosome Location	chr17:15466704-15466705
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12450350	1.00[EUR][1000 genomes]
rs12452348	1.00[EUR][1000 genomes]
rs7211746	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv960418	chr17:15441505-15470653	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	esv3338046	chr17:15466577-15467725	Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15465200-15467400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:15465400-15466800	Active TSS	K562	blood
3	chr17:15465400-15467200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:15465400-15467400	Active TSS	HepG2	liver
5	chr17:15465400-15467600	Active TSS	Muscle Satellite Cultured Cells	--
6	chr17:15465400-15467600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:15465400-15467800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr17:15465600-15466800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:15465600-15467400	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr17:15465600-15467400	Active TSS	Hela-S3	cervix
11	chr17:15465600-15467600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr17:15465600-15467800	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr17:15465600-15467800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr17:15465800-15467200	Active TSS	HMEC	breast
15	chr17:15465800-15467400	Active TSS	HUVEC	blood vessel
16	chr17:15465800-15467600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:15465800-15467600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr17:15465800-15467600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr17:15465800-15467600	Active TSS	Fetal Intestine Small	intestine
20	chr17:15466000-15466800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr17:15466000-15466800	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr17:15466000-15466800	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr17:15466000-15467000	Active TSS	H9 Cell Line	embryonic stem cell
24	chr17:15466000-15467000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr17:15466000-15467000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr17:15466000-15467200	Active TSS	H1 Cell Line	embryonic stem cell
27	chr17:15466000-15467200	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr17:15466000-15467200	Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr17:15466000-15467200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr17:15466000-15467200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr17:15466000-15467200	Active TSS	Brain Angular Gyrus	brain
32	chr17:15466000-15467200	Active TSS	Brain Cingulate Gyrus	brain
33	chr17:15466000-15467200	Active TSS	Dnd41	blood
34	chr17:15466000-15467200	Active TSS	HSMM	muscle
35	chr17:15466000-15467200	Active TSS	HSMMtube	muscle
36	chr17:15466000-15467200	Active TSS	NHDF-Ad	bronchial
37	chr17:15466000-15467400	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr17:15466000-15467400	Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr17:15466000-15467400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr17:15466000-15467400	Active TSS	Brain Germinal Matrix	brain
41	chr17:15466000-15467400	Active TSS	Fetal Intestine Large	intestine
42	chr17:15466000-15467400	Active TSS	Fetal Muscle Trunk	muscle
43	chr17:15466000-15467400	Active TSS	Fetal Stomach	stomach
44	chr17:15466000-15467400	Active TSS	A549	lung
45	chr17:15466000-15467400	Active TSS	Monocytes-CD14+_RO01746	blood
46	chr17:15466000-15467400	Active TSS	NH-A	brain
47	chr17:15466000-15467400	Active TSS	NHEK	skin
48	chr17:15466000-15467600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr17:15466000-15467600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr17:15466000-15467600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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