Variant report

Variant	rs28496233
Chromosome Location	chr8:130708576-130708577
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1010255	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11986284	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11994186	0.92[ASN][1000 genomes]
rs3903057	0.90[ASN][1000 genomes]
rs4076445	0.84[ASN][1000 genomes]
rs4501553	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4733723	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6470761	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993530	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011037	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7011406	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130703800-130709600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130705000-130708800	Weak transcription	Osteobl	bone
3	chr8:130705000-130709400	Weak transcription	NHEK	skin
4	chr8:130705000-130709600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:130705200-130709600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:130705400-130709800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:130705600-130710000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:130705800-130709800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:130705800-130709800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:130705800-130713600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:130707200-130713200	Weak transcription	Fetal Lung	lung
12	chr8:130708200-130708800	Flanking Active TSS	K562	blood
13	chr8:130708200-130709800	Enhancers	Dnd41	blood
14	chr8:130708200-130720200	Weak transcription	Esophagus	oesophagus
15	chr8:130708400-130708600	Enhancers	A549	lung
16	chr8:130708400-130709600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links