Variant report

Variant	rs3903057
Chromosome Location	chr8:130706597-130706598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1010255	0.89[GIH][hapmap];0.85[MKK][hapmap]
rs11994186	0.84[ASN][1000 genomes]
rs28496233	0.90[ASN][1000 genomes]
rs4076445	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733723	0.89[GIH][hapmap];0.85[MKK][hapmap]
rs6470761	0.90[ASN][1000 genomes]
rs6993530	0.90[ASN][1000 genomes]
rs7011406	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1018106	chr8:130697368-130708333	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130701600-130708400	Weak transcription	Spleen	Spleen
2	chr8:130701800-130707200	Enhancers	Fetal Lung	lung
3	chr8:130703800-130709600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130704600-130706800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:130705000-130708800	Weak transcription	Osteobl	bone
6	chr8:130705000-130709400	Weak transcription	NHEK	skin
7	chr8:130705000-130709600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:130705200-130709600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:130705400-130709800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:130705600-130708000	Weak transcription	Esophagus	oesophagus
11	chr8:130705600-130710000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:130705800-130706800	Weak transcription	A549	lung
13	chr8:130705800-130707000	Weak transcription	Fetal Stomach	stomach
14	chr8:130705800-130709800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:130705800-130709800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:130705800-130713600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:130706400-130706600	Enhancers	K562	blood
18	chr8:130706400-130707200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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