Variant report

Variant	rs28497401
Chromosome Location	chr16:75204946-75204947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75201271..75204984-chr16:75206160..75209473,3	MCF-7	breast:
2	chr16:75202431..75208120-chr16:75221491..75224394,5	MCF-7	breast:
3	chr16:75181809..75184382-chr16:75203649..75206291,2	MCF-7	breast:
4	chr16:75191567..75193662-chr16:75203830..75205952,2	MCF-7	breast:
5	chr16:75186746..75189106-chr16:75203648..75206218,2	K562	blood:

Variant related genes	Relation type
ENSG00000184517	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72802326	0.86[EUR][1000 genomes]
rs72802336	0.86[EUR][1000 genomes]
rs73617696	1.00[ASN][1000 genomes]
rs9931464	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv1066130	chr16:74983759-75231161	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1056082	chr16:75004990-75295847	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv833282	chr16:75154171-75330634	Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75183600-75206800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:75184600-75208200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:75189400-75207800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:75192200-75205200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:75192400-75205200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr16:75193000-75205400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr16:75193400-75205000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr16:75196200-75205200	ZNF genes & repeats	Liver	Liver
9	chr16:75196200-75207400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr16:75196800-75208200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:75197000-75205600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr16:75197400-75205200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr16:75197600-75205200	ZNF genes & repeats	Fetal Brain Female	brain
14	chr16:75197600-75205200	ZNF genes & repeats	Dnd41	blood
15	chr16:75197600-75205200	ZNF genes & repeats	GM12878-XiMat	blood
16	chr16:75197600-75206800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr16:75197600-75207800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:75197600-75208200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr16:75197600-75208200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr16:75197600-75209200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr16:75198200-75205200	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr16:75198400-75206400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr16:75198600-75205200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr16:75198600-75205200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr16:75198600-75207000	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr16:75198800-75205000	ZNF genes & repeats	Thymus	Thymus
27	chr16:75198800-75205400	ZNF genes & repeats	Fetal Intestine Large	intestine
28	chr16:75198800-75206800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr16:75199000-75205000	ZNF genes & repeats	A549	lung
30	chr16:75199200-75205400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr16:75199200-75207000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
32	chr16:75199400-75206400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr16:75199400-75208200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr16:75199600-75205000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr16:75199600-75205000	ZNF genes & repeats	NH-A	brain
36	chr16:75199600-75205800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
37	chr16:75199600-75206800	ZNF genes & repeats	Fetal Lung	lung
38	chr16:75200000-75205200	ZNF genes & repeats	HepG2	liver
39	chr16:75200000-75205800	ZNF genes & repeats	HMEC	breast
40	chr16:75200000-75206800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr16:75200000-75208200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr16:75200200-75206800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
43	chr16:75200200-75206800	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr16:75200600-75205000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
45	chr16:75200600-75205000	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr16:75200600-75205000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
47	chr16:75200600-75205000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
48	chr16:75200600-75205000	ZNF genes & repeats	HUVEC	blood vessel
49	chr16:75200600-75205000	ZNF genes & repeats	K562	blood
50	chr16:75200600-75205000	ZNF genes & repeats	NHEK	skin

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