Variant report

Variant	rs73617696
Chromosome Location	chr16:75206598-75206599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75205169..75207545-chr16:75207747..75209392,2	K562	blood:
2	chr16:75202431..75208120-chr16:75221491..75224394,5	MCF-7	breast:
3	chr16:75095975..75097743-chr16:75205353..75207113,2	MCF-7	breast:
4	chr16:75201271..75204984-chr16:75206160..75209473,3	MCF-7	breast:
5	chr16:75199476..75203031-chr16:75206152..75208984,4	K562	blood:
6	chr16:75200044..75202485-chr16:75206152..75208909,2	K562	blood:
7	chr16:75205674..75208664-chr16:75208824..75212271,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28497401	1.00[ASN][1000 genomes]
rs9931464	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv1066130	chr16:74983759-75231161	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1056082	chr16:75004990-75295847	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv833282	chr16:75154171-75330634	Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75183600-75206800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:75184600-75208200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:75189400-75207800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:75196200-75207400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr16:75196800-75208200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:75197600-75206800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:75197600-75207800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr16:75197600-75208200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr16:75197600-75208200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:75197600-75209200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr16:75198600-75207000	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr16:75198800-75206800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr16:75199200-75207000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
14	chr16:75199400-75208200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr16:75199600-75206800	ZNF genes & repeats	Fetal Lung	lung
16	chr16:75200000-75206800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr16:75200000-75208200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chr16:75200200-75206800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr16:75200200-75206800	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr16:75200600-75207000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr16:75201400-75206600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
22	chr16:75202600-75206800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr16:75204200-75208800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:75205000-75209000	Weak transcription	Ovary	ovary
25	chr16:75205200-75206600	Weak transcription	Placenta	Placenta
26	chr16:75205200-75206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr16:75205200-75207000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr16:75205200-75207400	Weak transcription	Colon Smooth Muscle	Colon
29	chr16:75205200-75207400	Weak transcription	Fetal Brain Male	brain
30	chr16:75205200-75207600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr16:75205200-75207800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr16:75205600-75206800	ZNF genes & repeats	Brain Germinal Matrix	brain
33	chr16:75206000-75206600	ZNF genes & repeats	Fetal Muscle Leg	muscle
34	chr16:75206000-75206800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr16:75206000-75207000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:75206000-75208800	Weak transcription	Fetal Heart	heart
37	chr16:75206200-75206600	ZNF genes & repeats	Fetal Intestine Large	intestine
38	chr16:75206200-75206600	ZNF genes & repeats	HSMM	muscle
39	chr16:75206200-75206800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr16:75206200-75206800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
41	chr16:75206200-75206800	ZNF genes & repeats	Aorta	Aorta
42	chr16:75206200-75206800	ZNF genes & repeats	Fetal Stomach	stomach
43	chr16:75206200-75206800	ZNF genes & repeats	Left Ventricle	heart
44	chr16:75206200-75206800	ZNF genes & repeats	Lung	lung
45	chr16:75206200-75206800	ZNF genes & repeats	Dnd41	blood
46	chr16:75206200-75207000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr16:75206200-75207000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr16:75206400-75206800	ZNF genes & repeats	Fetal Thymus	thymus
49	chr16:75206400-75206800	ZNF genes & repeats	Thymus	Thymus
50	chr16:75206400-75207400	ZNF genes & repeats	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links