Variant report

Variant	rs28497438
Chromosome Location	chr4:167229824-167229825
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10019226	0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10030891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1011873	0.81[ASN][1000 genomes]
rs10213117	0.81[ASN][1000 genomes]
rs10517890	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10517891	0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10517892	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10857378	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11100641	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11100642	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11100643	0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12502996	0.83[ASN][1000 genomes]
rs12504155	0.97[AMR][1000 genomes]
rs12505587	0.81[ASN][1000 genomes]
rs12507273	0.97[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12507611	0.81[ASN][1000 genomes]
rs1352964	0.81[ASN][1000 genomes]
rs1470384	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1602681	0.81[ASN][1000 genomes]
rs17634848	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17691380	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17691405	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28864214	0.82[ASN][1000 genomes]
rs374975	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4147010	0.81[ASN][1000 genomes]
rs425222	0.89[ASN][1000 genomes]
rs438335	0.87[ASN][1000 genomes]
rs4510432	0.81[ASN][1000 genomes]
rs56755081	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58332455	0.81[ASN][1000 genomes]
rs61575174	0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6829268	0.83[ASN][1000 genomes]
rs72970292	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv821638	chr4:166837633-167262625	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1034421	chr4:166961339-167893289	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537339	chr4:166961339-167893289	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv881029	chr4:167060016-167284757	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1032009	chr4:167154813-167403235	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv880900	chr4:167155443-167368812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv881390	chr4:167163302-167237947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv881290	chr4:167163302-167284757	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv880804	chr4:167185391-167274823	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv880967	chr4:167185391-167366567	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv881405	chr4:167193885-167628013	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:167226600-167230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:167229000-167231200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:167229200-167230400	Enhancers	NHEK	skin
4	chr4:167229400-167231000	Enhancers	HMEC	breast
5	chr4:167229600-167230600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:167229800-167230000	Enhancers	Pancreatic Islets	Pancreatic Islet

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