Variant report

Variant	rs6829268
Chromosome Location	chr4:167292285-167292286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10019226	0.86[ASN][1000 genomes]
rs10030891	0.83[ASN][1000 genomes]
rs1011873	0.89[ASN][1000 genomes]
rs10213117	0.89[ASN][1000 genomes]
rs10517890	0.87[ASN][1000 genomes]
rs10517891	0.86[ASN][1000 genomes]
rs10517892	0.83[ASN][1000 genomes]
rs10857378	0.81[ASN][1000 genomes]
rs11100641	0.80[ASN][1000 genomes]
rs11100642	0.83[ASN][1000 genomes]
rs11100643	0.81[ASN][1000 genomes]
rs12502996	0.92[ASN][1000 genomes]
rs12504155	0.89[ASN][1000 genomes]
rs12505587	0.89[ASN][1000 genomes]
rs12507273	0.96[ASN][1000 genomes]
rs12507611	0.89[ASN][1000 genomes]
rs1352964	0.89[ASN][1000 genomes]
rs1602681	0.89[ASN][1000 genomes]
rs17518554	0.96[EUR][1000 genomes]
rs17634848	0.89[ASN][1000 genomes]
rs17691380	0.89[ASN][1000 genomes]
rs17691405	0.87[ASN][1000 genomes]
rs17695575	0.83[ASN][1000 genomes]
rs2131246	0.86[EUR][1000 genomes]
rs2199226	1.00[EUR][1000 genomes]
rs2611702	0.95[EUR][1000 genomes]
rs28497438	0.83[ASN][1000 genomes]
rs28762422	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28864214	0.91[ASN][1000 genomes]
rs28886636	0.81[AMR][1000 genomes]
rs28893206	0.81[AMR][1000 genomes]
rs4147010	0.89[ASN][1000 genomes]
rs4510432	0.89[ASN][1000 genomes]
rs4691273	0.86[EUR][1000 genomes]
rs56755081	0.89[ASN][1000 genomes]
rs58332455	0.89[ASN][1000 genomes]
rs59667461	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs61575174	0.82[ASN][1000 genomes]
rs6828297	1.00[EUR][1000 genomes]
rs72970292	0.89[ASN][1000 genomes]
rs72988431	0.96[EUR][1000 genomes]
rs72988450	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72988452	0.97[EUR][1000 genomes]
rs7681977	0.92[EUR][1000 genomes]
rs7682504	0.92[EUR][1000 genomes]
rs9790583	0.92[EUR][1000 genomes]
rs980999	0.92[EUR][1000 genomes]
rs9996104	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034421	chr4:166961339-167893289	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv537339	chr4:166961339-167893289	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032009	chr4:167154813-167403235	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880900	chr4:167155443-167368812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv880967	chr4:167185391-167366567	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv881405	chr4:167193885-167628013	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:167288000-167297800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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