Variant report

Variant	rs28498133
Chromosome Location	chr20:23181030-23181031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23122546..23124571-chr20:23180527..23183160,2	MCF-7	breast:
2	chr20:23128719..23130340-chr20:23179847..23182584,2	K562	blood:
3	chr20:23173550..23175441-chr20:23179224..23181550,2	K562	blood:
4	chr20:23066160..23068194-chr20:23180754..23182978,2	K562	blood:
5	chr20:23178876..23181209-chr20:23183336..23185495,2	K562	blood:
6	chr20:22670744..22673575-chr20:23180710..23182466,2	MCF-7	breast:
7	chr20:23031492..23032347-chr20:23180782..23182215,4	K562	blood:
8	chr20:23180909..23182813-chr20:23193435..23195375,2	MCF-7	breast:
9	chr20:23180782..23182510-chr20:23188143..23190298,2	MCF-7	breast:
10	chr20:23031208..23032750-chr20:23180279..23182634,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6036332	0.87[AFR][1000 genomes]
rs6048583	0.87[AFR][1000 genomes]
rs6515310	1.00[AFR][1000 genomes]
rs6515311	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23175200-23181200	Weak transcription	Placenta	Placenta
2	chr20:23175200-23181200	Weak transcription	Left Ventricle	heart
3	chr20:23175200-23181200	Weak transcription	Right Ventricle	heart
4	chr20:23178800-23182600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr20:23179200-23183600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr20:23179400-23183600	Weak transcription	NHDF-Ad	bronchial
7	chr20:23179800-23181400	Weak transcription	K562	blood
8	chr20:23180200-23181800	Enhancers	GM12878-XiMat	blood
9	chr20:23180200-23182200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr20:23180400-23181800	Bivalent Enhancer	Fetal Brain Male	brain
11	chr20:23180400-23182600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr20:23180800-23184800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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