Variant report

Variant	rs28499556
Chromosome Location	chr8:85458881-85458882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10090567	0.88[AMR][1000 genomes]
rs10095469	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10101057	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10106490	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10106879	0.88[AMR][1000 genomes]
rs10110773	0.88[AMR][1000 genomes]
rs28377892	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28410514	0.88[AMR][1000 genomes]
rs28552445	0.88[AMR][1000 genomes]
rs28682420	0.88[AMR][1000 genomes]
rs28748272	0.88[AMR][1000 genomes]
rs28750120	0.88[AMR][1000 genomes]
rs28753755	0.88[AMR][1000 genomes]
rs7834473	0.88[AMR][1000 genomes]
rs7836891	0.88[AMR][1000 genomes]
rs7839325	0.88[AMR][1000 genomes]
rs7844228	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85436200-85461200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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