Variant report

Variant	rs28753755
Chromosome Location	chr8:85509448-85509449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10090567	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10095469	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10096184	0.95[EUR][1000 genomes]
rs10101057	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10103984	1.00[EUR][1000 genomes]
rs10106490	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10106879	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10107192	1.00[EUR][1000 genomes]
rs10108862	0.95[EUR][1000 genomes]
rs10110773	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10111461	0.95[EUR][1000 genomes]
rs10504806	1.00[EUR][1000 genomes]
rs11984578	1.00[EUR][1000 genomes]
rs11985257	1.00[EUR][1000 genomes]
rs11985284	1.00[EUR][1000 genomes]
rs11988419	1.00[EUR][1000 genomes]
rs11989935	1.00[EUR][1000 genomes]
rs11994516	1.00[EUR][1000 genomes]
rs1488702	1.00[EUR][1000 genomes]
rs16913052	1.00[EUR][1000 genomes]
rs2029358	1.00[EUR][1000 genomes]
rs28377892	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28410514	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28499556	0.88[AMR][1000 genomes]
rs28552445	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28615259	1.00[EUR][1000 genomes]
rs28673182	0.95[EUR][1000 genomes]
rs28682420	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28690245	0.95[EUR][1000 genomes]
rs28701915	1.00[EUR][1000 genomes]
rs28748272	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28750120	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28792691	1.00[EUR][1000 genomes]
rs28838665	1.00[EUR][1000 genomes]
rs35982821	0.89[EUR][1000 genomes]
rs7009141	1.00[EUR][1000 genomes]
rs73294048	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294082	1.00[EUR][1000 genomes]
rs73294084	1.00[EUR][1000 genomes]
rs7820782	0.95[EUR][1000 genomes]
rs7834473	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7836891	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7839325	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7844228	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85498200-85516400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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