Variant report

Variant	rs10096184
Chromosome Location	chr8:85366874-85366875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10088701	0.87[YRI][hapmap]
rs10090567	0.95[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095469	1.00[EUR][1000 genomes]
rs10101057	1.00[EUR][1000 genomes]
rs10103023	0.90[YRI][hapmap]
rs10106490	1.00[EUR][1000 genomes]
rs10106879	0.94[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107192	0.95[EUR][1000 genomes]
rs10109673	0.85[TSI][hapmap]
rs10110773	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504806	0.85[TSI][hapmap];0.95[EUR][1000 genomes]
rs11984578	0.85[TSI][hapmap];0.95[EUR][1000 genomes]
rs11985257	0.85[TSI][hapmap];0.95[EUR][1000 genomes]
rs11985284	0.95[EUR][1000 genomes]
rs11988419	0.95[EUR][1000 genomes]
rs11989935	0.95[EUR][1000 genomes]
rs12334423	0.90[YRI][hapmap]
rs1320767	0.85[TSI][hapmap]
rs16913052	0.95[EUR][1000 genomes]
rs2029358	0.95[EUR][1000 genomes]
rs28377892	1.00[EUR][1000 genomes]
rs28410514	0.95[EUR][1000 genomes]
rs28470202	0.85[TSI][hapmap]
rs28552445	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28615259	0.95[EUR][1000 genomes]
rs28673182	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28682420	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28701915	0.95[EUR][1000 genomes]
rs28748272	0.95[EUR][1000 genomes]
rs28750120	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28753755	0.95[EUR][1000 genomes]
rs28792691	0.95[EUR][1000 genomes]
rs28838665	0.95[EUR][1000 genomes]
rs7009141	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs711008	0.85[ASW][hapmap];0.86[YRI][hapmap]
rs73294048	0.95[EUR][1000 genomes]
rs73294082	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73294084	0.95[EUR][1000 genomes]
rs7812999	0.85[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7823245	0.85[EUR][1000 genomes]
rs7834473	0.84[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7836891	1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839325	0.90[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844228	0.94[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9298425	0.85[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9657052	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10096184	TEX15	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85361800-85371600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:85366600-85367000	Enhancers	Liver	Liver
3	chr8:85366800-85367400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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