Variant report

Variant	rs7823245
Chromosome Location	chr8:85309696-85309697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10088701	1.00[CEU][hapmap]
rs10090567	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10094681	0.95[AFR][1000 genomes]
rs10095469	0.85[EUR][1000 genomes]
rs10096184	0.85[EUR][1000 genomes]
rs10101057	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10103023	1.00[CEU][hapmap]
rs10106490	0.85[EUR][1000 genomes]
rs10106879	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10110773	0.85[EUR][1000 genomes]
rs1491562	1.00[CEU][hapmap]
rs28377892	0.85[EUR][1000 genomes]
rs28552445	0.85[EUR][1000 genomes]
rs28673182	0.85[EUR][1000 genomes]
rs28682420	0.85[EUR][1000 genomes]
rs28750120	0.85[EUR][1000 genomes]
rs7014151	1.00[CEU][hapmap]
rs73688489	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7834473	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7836891	0.85[EUR][1000 genomes]
rs7839325	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7844228	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1030263	chr8:85293666-85332024	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85309400-85310000	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links