Variant report
| Variant | rs28690245 |
|---|---|
| Chromosome Location | chr8:85634077-85634078 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10095469 | 0.90[EUR][1000 genomes] |
| rs10101057 | 0.90[EUR][1000 genomes] |
| rs10103984 | 0.95[EUR][1000 genomes] |
| rs10106490 | 0.90[EUR][1000 genomes] |
| rs10107192 | 0.95[EUR][1000 genomes] |
| rs10108862 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10111461 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10504806 | 0.95[EUR][1000 genomes] |
| rs11984578 | 0.95[EUR][1000 genomes] |
| rs11985257 | 0.95[EUR][1000 genomes] |
| rs11985284 | 0.95[EUR][1000 genomes] |
| rs11988419 | 0.95[EUR][1000 genomes] |
| rs11989935 | 0.95[EUR][1000 genomes] |
| rs11994516 | 0.95[EUR][1000 genomes] |
| rs1488702 | 0.95[EUR][1000 genomes] |
| rs16913052 | 0.95[EUR][1000 genomes] |
| rs2029358 | 0.95[EUR][1000 genomes] |
| rs28377892 | 0.90[EUR][1000 genomes] |
| rs28410514 | 0.95[EUR][1000 genomes] |
| rs28615259 | 0.95[EUR][1000 genomes] |
| rs28701915 | 0.95[EUR][1000 genomes] |
| rs28748272 | 0.95[EUR][1000 genomes] |
| rs28753755 | 0.95[EUR][1000 genomes] |
| rs28792691 | 0.95[EUR][1000 genomes] |
| rs28838665 | 0.95[EUR][1000 genomes] |
| rs35982821 | 0.94[EUR][1000 genomes] |
| rs7009141 | 0.95[EUR][1000 genomes] |
| rs73294048 | 0.95[EUR][1000 genomes] |
| rs73294082 | 0.95[EUR][1000 genomes] |
| rs73294084 | 0.95[EUR][1000 genomes] |
| rs7820782 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3481417 | chr8:85279453-86145229 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | esv3481418 | chr8:85279453-86145229 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv427823 | chr8:85538522-86009068 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv831376 | chr8:85577422-85726311 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:85633800-85634400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr8:85634000-85634200 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 3 | chr8:85634000-85634800 | Enhancers | NH-A | brain |
