Variant report

Variant	rs28502287
Chromosome Location	chr4:96278714-96278715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10006465	0.81[AFR][1000 genomes]
rs10516967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023523	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96264400-96283600	Weak transcription	Fetal Stomach	stomach
3	chr4:96272400-96282400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:96273800-96285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96274200-96281600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:96276800-96279800	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:96276800-96280600	Weak transcription	Brain Substantia Nigra	brain
8	chr4:96276800-96281800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:96277800-96278800	Weak transcription	Fetal Kidney	kidney
10	chr4:96278600-96278800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:96278600-96279000	Strong transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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