Variant report

Variant	rs10006465
Chromosome Location	chr4:96233679-96233680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10002089	0.88[AFR][1000 genomes]
rs10023581	0.94[YRI][hapmap]
rs10029550	0.93[YRI][hapmap]
rs10516967	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs17023493	0.86[YRI][hapmap]
rs17023523	0.94[YRI][hapmap];1.00[AFR][1000 genomes]
rs28502287	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96220400-96238800	Weak transcription	Aorta	Aorta
2	chr4:96223000-96252400	Weak transcription	Fetal Lung	lung
3	chr4:96226600-96236800	Weak transcription	Brain Angular Gyrus	brain
4	chr4:96226800-96238200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:96227000-96235400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:96229000-96234200	Weak transcription	Brain Anterior Caudate	brain
7	chr4:96229200-96235600	Weak transcription	Brain Substantia Nigra	brain
8	chr4:96231600-96236400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:96232600-96237600	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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