Variant report

Variant	rs10023581
Chromosome Location	chr4:96228564-96228565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10002089	0.85[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10006465	0.94[YRI][hapmap]
rs10024121	0.87[AFR][1000 genomes]
rs10029550	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516964	1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs10516965	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10516967	0.93[YRI][hapmap]
rs11097467	1.00[JPT][hapmap]
rs11735824	1.00[JPT][hapmap]
rs1384868	1.00[JPT][hapmap];0.88[AFR][1000 genomes]
rs1586163	1.00[JPT][hapmap]
rs17023493	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023523	0.94[YRI][hapmap]
rs17023540	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17023543	1.00[JPT][hapmap];0.88[AFR][1000 genomes]
rs17023617	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes]
rs17023624	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs17023627	0.86[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs17023644	1.00[JPT][hapmap]
rs17023654	0.86[CEU][hapmap]
rs17369242	0.88[EUR][1000 genomes]
rs2626054	1.00[JPT][hapmap]
rs2626055	1.00[JPT][hapmap]
rs28369639	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28417701	0.85[EUR][1000 genomes]
rs28475150	0.84[AFR][1000 genomes]
rs28494154	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28526447	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28621043	0.82[AFR][1000 genomes]
rs28631733	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6532552	1.00[JPT][hapmap]
rs66536449	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs66969062	0.88[AFR][1000 genomes]
rs67681548	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67892114	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6816110	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6821360	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6822806	0.85[CEU][hapmap]
rs6848909	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs6857369	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72676405	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676414	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676415	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676421	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72676441	0.85[EUR][1000 genomes]
rs72676442	0.85[EUR][1000 genomes]
rs7687905	0.87[AFR][1000 genomes]
rs9991852	0.83[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96220400-96238800	Weak transcription	Aorta	Aorta
2	chr4:96223000-96252400	Weak transcription	Fetal Lung	lung
3	chr4:96225000-96229400	Enhancers	Brain Hippocampus Middle	brain
4	chr4:96226600-96236800	Weak transcription	Brain Angular Gyrus	brain
5	chr4:96226800-96238200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:96227000-96228600	Weak transcription	Brain Anterior Caudate	brain
7	chr4:96227000-96235400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:96227800-96229200	Enhancers	Brain Substantia Nigra	brain
9	chr4:96228000-96231200	Weak transcription	Brain Cingulate Gyrus	brain

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