Variant report

Variant	rs72676405
Chromosome Location	chr4:96217675-96217676
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10002089	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10023581	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029550	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023493	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023540	0.80[AMR][1000 genomes]
rs17369242	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28369639	0.84[EUR][1000 genomes]
rs28417701	0.83[EUR][1000 genomes]
rs28494154	0.84[EUR][1000 genomes]
rs66536449	0.80[AMR][1000 genomes]
rs67681548	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67892114	0.83[EUR][1000 genomes]
rs6816110	0.84[EUR][1000 genomes]
rs6821360	0.84[EUR][1000 genomes]
rs6857369	0.85[EUR][1000 genomes]
rs72676404	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72676414	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676415	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676421	0.84[EUR][1000 genomes]
rs72676441	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72676442	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96186000-96220400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:96190600-96220800	Weak transcription	Fetal Kidney	kidney
3	chr4:96198800-96219600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:96201000-96226000	Weak transcription	Ovary	ovary
5	chr4:96205200-96219400	Weak transcription	Aorta	Aorta
6	chr4:96210000-96218000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:96210200-96218800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:96210200-96219800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:96210600-96218000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:96211000-96218200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:96211000-96225600	Weak transcription	Osteobl	bone
12	chr4:96211200-96218800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:96211200-96225200	Weak transcription	HSMM	muscle
14	chr4:96212200-96222800	Weak transcription	A549	lung
15	chr4:96212800-96219800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:96214400-96218000	Weak transcription	Fetal Lung	lung
17	chr4:96215800-96224000	Weak transcription	Brain Anterior Caudate	brain
18	chr4:96216200-96218000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:96216200-96225800	Weak transcription	Brain Angular Gyrus	brain
20	chr4:96216400-96219600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:96216800-96218400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr4:96217000-96220200	Weak transcription	Brain Substantia Nigra	brain
23	chr4:96217200-96218800	Weak transcription	Fetal Stomach	stomach
24	chr4:96217200-96219600	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:96217200-96220400	Weak transcription	Rectal Smooth Muscle	rectum

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