Variant report

Variant	rs72676404
Chromosome Location	chr4:96214829-96214830
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96209940..96213311-chr4:96213597..96217290,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10029550	0.82[EUR][1000 genomes]
rs67681548	0.83[EUR][1000 genomes]
rs72676405	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72676414	0.83[EUR][1000 genomes]
rs72676415	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96186000-96220400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:96190600-96220800	Weak transcription	Fetal Kidney	kidney
3	chr4:96198800-96219600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:96201000-96226000	Weak transcription	Ovary	ovary
5	chr4:96205200-96219400	Weak transcription	Aorta	Aorta
6	chr4:96209800-96215000	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:96209800-96216600	Enhancers	Primary T cells from cord blood	blood
8	chr4:96210000-96218000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:96210200-96218800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:96210200-96219800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:96210400-96215600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr4:96210600-96218000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:96211000-96218200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:96211000-96225600	Weak transcription	Osteobl	bone
15	chr4:96211200-96218800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:96211200-96225200	Weak transcription	HSMM	muscle
17	chr4:96212200-96222800	Weak transcription	A549	lung
18	chr4:96212600-96215000	Enhancers	HUVEC	blood vessel
19	chr4:96212800-96219800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:96213000-96215800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr4:96213400-96215000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:96213400-96215800	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr4:96213600-96215200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:96213600-96215200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr4:96213600-96215800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr4:96213600-96216000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr4:96213800-96215000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:96213800-96215600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr4:96213800-96215800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:96213800-96215800	Enhancers	Brain Anterior Caudate	brain
31	chr4:96214000-96215000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:96214000-96215000	Enhancers	Fetal Thymus	thymus
33	chr4:96214000-96215400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr4:96214000-96216200	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr4:96214000-96217200	Enhancers	Brain Hippocampus Middle	brain
36	chr4:96214200-96216400	Enhancers	Brain Cingulate Gyrus	brain
37	chr4:96214400-96215200	Enhancers	Dnd41	blood
38	chr4:96214400-96215800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr4:96214400-96218000	Weak transcription	Fetal Lung	lung
40	chr4:96214600-96215000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr4:96214600-96215200	Enhancers	HMEC	breast
42	chr4:96214600-96216200	Enhancers	Brain Angular Gyrus	brain
43	chr4:96214600-96217000	Enhancers	Brain Substantia Nigra	brain
44	chr4:96214800-96215400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:96214800-96216000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links