Variant report

Variant	rs6532552
Chromosome Location	chr4:96283011-96283012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96282890..96284742-chr4:96286355..96289329,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10002089	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10023581	1.00[JPT][hapmap]
rs10024121	1.00[ASN][1000 genomes]
rs10029550	1.00[JPT][hapmap]
rs10516964	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10516965	1.00[JPT][hapmap]
rs10516968	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs11097467	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11728047	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735824	0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943290	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384868	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1586163	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023493	1.00[JPT][hapmap]
rs17023540	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023543	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023545	1.00[ASN][1000 genomes]
rs17023617	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023624	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023644	1.00[JPT][hapmap]
rs17369242	1.00[ASN][1000 genomes]
rs2621442	1.00[ASN][1000 genomes]
rs2621443	1.00[ASN][1000 genomes]
rs2621446	1.00[ASN][1000 genomes]
rs2626054	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2626055	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2626056	1.00[ASN][1000 genomes]
rs28368523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28369639	1.00[ASN][1000 genomes]
rs28475150	1.00[ASN][1000 genomes]
rs28494154	1.00[ASN][1000 genomes]
rs28526447	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28537146	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28621043	1.00[ASN][1000 genomes]
rs28631733	1.00[ASN][1000 genomes]
rs28689658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28692541	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28725772	0.81[EUR][1000 genomes]
rs66536449	1.00[ASN][1000 genomes]
rs66625786	1.00[ASN][1000 genomes]
rs66969062	1.00[ASN][1000 genomes]
rs67577599	1.00[ASN][1000 genomes]
rs67892114	1.00[ASN][1000 genomes]
rs6816110	1.00[ASN][1000 genomes]
rs6821360	1.00[ASN][1000 genomes]
rs6848909	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6857369	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72676421	1.00[ASN][1000 genomes]
rs72676441	1.00[ASN][1000 genomes]
rs72676442	1.00[ASN][1000 genomes]
rs7687905	1.00[ASN][1000 genomes]
rs9991852	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9999043	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96264400-96283600	Weak transcription	Fetal Stomach	stomach
3	chr4:96273800-96285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:96279200-96284600	Enhancers	Fetal Lung	lung
6	chr4:96280000-96284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:96280600-96283200	Enhancers	Brain Substantia Nigra	brain
8	chr4:96281800-96283200	Enhancers	Brain Hippocampus Middle	brain
9	chr4:96281800-96283400	Enhancers	Brain Anterior Caudate	brain
10	chr4:96281800-96284800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:96281800-96285200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:96282400-96283400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr4:96282400-96283800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:96282600-96283200	Active TSS	Fetal Brain Male	brain
15	chr4:96282600-96283600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:96282600-96284400	Enhancers	K562	blood
17	chr4:96282800-96283600	Enhancers	Osteobl	bone
18	chr4:96282800-96284600	Weak transcription	Fetal Kidney	kidney
19	chr4:96282800-96285000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:96283000-96283400	Enhancers	Brain Angular Gyrus	brain
21	chr4:96283000-96283400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:96283000-96284200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:96283000-96284400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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