Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11097467	0.84[EUR][1000 genomes]
rs11728047	0.82[EUR][1000 genomes]
rs11735824	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs11943290	0.82[EUR][1000 genomes]
rs12644981	0.84[EUR][1000 genomes]
rs1542616	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2621442	0.84[EUR][1000 genomes]
rs2621443	0.84[EUR][1000 genomes]
rs2621446	0.84[EUR][1000 genomes]
rs2626054	0.84[EUR][1000 genomes]
rs2626055	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2626056	0.84[EUR][1000 genomes]
rs28368523	0.82[EUR][1000 genomes]
rs28537146	0.82[EUR][1000 genomes]
rs28689658	0.83[EUR][1000 genomes]
rs28725772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56219612	0.92[ASN][1000 genomes]
rs56249523	0.92[ASN][1000 genomes]
rs6532552	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6846874	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6846883	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96284400-96291600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
4	chr4:96285400-96291600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:96285400-96291600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:96285600-96293200	Weak transcription	Fetal Heart	heart
7	chr4:96285800-96291600	Weak transcription	Brain Angular Gyrus	brain
8	chr4:96285800-96295400	Weak transcription	Fetal Kidney	kidney
9	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:96289000-96289800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr4:96289400-96291600	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:96289600-96291600	Weak transcription	Brain Substantia Nigra	brain

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