Variant report

Variant	rs2626054
Chromosome Location	chr4:96262093-96262094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10002089	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10023581	1.00[JPT][hapmap]
rs10024121	1.00[ASN][1000 genomes]
rs10029550	1.00[JPT][hapmap]
rs10516964	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10516965	1.00[JPT][hapmap]
rs10516968	0.84[EUR][1000 genomes]
rs11097467	1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728047	1.00[ASN][1000 genomes]
rs11735824	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11943290	1.00[ASN][1000 genomes]
rs12644981	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1384868	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1586163	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023493	1.00[JPT][hapmap]
rs17023540	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023543	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023545	1.00[ASN][1000 genomes]
rs17023617	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023624	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17023644	1.00[JPT][hapmap]
rs17369242	1.00[ASN][1000 genomes]
rs2621442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621443	0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621446	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2626055	1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2626056	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28368523	1.00[ASN][1000 genomes]
rs28369639	1.00[ASN][1000 genomes]
rs28475150	1.00[ASN][1000 genomes]
rs28494154	1.00[ASN][1000 genomes]
rs28526447	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28537146	1.00[ASN][1000 genomes]
rs28621043	1.00[ASN][1000 genomes]
rs28631733	1.00[ASN][1000 genomes]
rs28689658	1.00[ASN][1000 genomes]
rs28692541	1.00[ASN][1000 genomes]
rs28725772	0.84[EUR][1000 genomes]
rs6532552	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66536449	1.00[ASN][1000 genomes]
rs66625786	1.00[ASN][1000 genomes]
rs66969062	1.00[ASN][1000 genomes]
rs67577599	1.00[ASN][1000 genomes]
rs67892114	1.00[ASN][1000 genomes]
rs6816110	1.00[ASN][1000 genomes]
rs6821360	1.00[ASN][1000 genomes]
rs6846874	0.81[EUR][1000 genomes]
rs6848909	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6857369	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72676421	1.00[ASN][1000 genomes]
rs72676441	1.00[ASN][1000 genomes]
rs72676442	1.00[ASN][1000 genomes]
rs7687905	1.00[ASN][1000 genomes]
rs9991852	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9999043	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96241000-96267600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96243400-96263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:96247200-96265000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:96250200-96263200	Weak transcription	Brain Angular Gyrus	brain
6	chr4:96250400-96263000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:96250400-96263000	Weak transcription	Fetal Stomach	stomach
8	chr4:96250600-96263200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:96256600-96262800	Weak transcription	Fetal Lung	lung
10	chr4:96260400-96265800	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:96261000-96263200	Weak transcription	Brain Substantia Nigra	brain
12	chr4:96261800-96265200	Weak transcription	Fetal Intestine Small	intestine

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